Description : Unknown function
Gene families : OG_42_0006832 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006832_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.F00342.1 | |
Cluster | HCAA Clusters: Cluster_58 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
123319 | No alias | Function unknown | 0.04 | Orthogroups_2024-Update | |
A4A49_08062 | No alias | hypothetical protein | 0.04 | Orthogroups_2024-Update | |
At1g42440 | No alias | At1g42440/F7F22_7 [Source:UniProtKB/TrEMBL;Acc:Q9ASU6] | 0.05 | Orthogroups_2024-Update | |
Bradi1g41930 | No alias | Function unknown | 0.08 | Orthogroups_2024-Update | |
Cre16.g673700 | No alias | Function unknown | 0.19 | Orthogroups_2024-Update | |
Glyma.04G018100 | No alias | Function unknown | 0.06 | Orthogroups_2024-Update | |
Glyma.06G018400 | No alias | Function unknown | 0.08 | Orthogroups_2024-Update | |
Kfl00278_0120 | kfl00278_0120_v1.1 | (at1g42440 : 386.0) FUNCTIONS IN: molecular_function... | 0.08 | Orthogroups_2024-Update | |
LOC_Os11g19250 | No alias | AARP2CN domain containing protein, expressed | 0.04 | Orthogroups_2024-Update | |
Mp4g14950.1 | No alias | no hits & (original description: none) | 0.02 | Orthogroups_2024-Update | |
Potri.005G250100 | No alias | Function unknown | 0.04 | Orthogroups_2024-Update | |
Pp1s30_137V6 | No alias | 20s rrna homolog | 0.1 | Orthogroups_2024-Update | |
Seita.3G041200.1 | No alias | Unknown function | 0.11 | Orthogroups_2024-Update | |
Sobic.009G249800.1 | No alias | Unknown function | 0.09 | Orthogroups_2024-Update | |
Solyc04g082330 | No alias | pre-rRNA-processing TSR1-like protein (AHRD V3.3 *** AT1G42440.1) | 0.12 | Orthogroups_2024-Update | |
Sopen04g035950 | No alias | Protein of unknown function (DUF663) | 0.09 | Orthogroups_2024-Update | |
evm.model.contig_511.2 | No alias | (at1g42440 : 249.0) FUNCTIONS IN: molecular_function... | 0.09 | Orthogroups_2024-Update | |
evm.model.tig00021357.35 | No alias | (at1g42440 : 377.0) FUNCTIONS IN: molecular_function... | 0.05 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005634 | nucleus | IEA | 16Dec |
BP | GO:0042254 | ribosome biogenesis | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000049 | tRNA binding | IEP | Predicted GO |
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
MF | GO:0005488 | binding | IEP | Predicted GO |
MF | GO:0005515 | protein binding | IEP | Predicted GO |
CC | GO:0005730 | nucleolus | IEP | Predicted GO |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006766 | vitamin metabolic process | IEP | Predicted GO |
BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Predicted GO |
BP | GO:0006771 | riboflavin metabolic process | IEP | Predicted GO |
MF | GO:0008134 | transcription factor binding | IEP | Predicted GO |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
MF | GO:0008686 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | IEP | Predicted GO |
BP | GO:0009110 | vitamin biosynthetic process | IEP | Predicted GO |
BP | GO:0009231 | riboflavin biosynthetic process | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
BP | GO:0030490 | maturation of SSU-rRNA | IEP | Predicted GO |
MF | GO:0030515 | snoRNA binding | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
CC | GO:0030688 | preribosome, small subunit precursor | IEP | Predicted GO |
CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Predicted GO |
BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
No external refs found! |