Description : regulatory ubiquitin-protein ligase *(PRU2) & RING-H2-class ATL-subclass E3 ubiquitin ligase
Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.F00391.1 | |
Cluster | HCAA Clusters: Cluster_197 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
39820 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
402335 | No alias | AtL5 | 0.02 | Orthogroups_2024-Update | |
At1g49230 | No alias | RING-H2 finger protein ATL78... | 0.04 | Orthogroups_2024-Update | |
Brara.A00916.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
Brara.G03437.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
GRMZM2G015409 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.03G203400 | No alias | RING/U-box superfamily protein | 0.01 | Orthogroups_2024-Update | |
HORVU3Hr1G087720.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
LOC_Os01g11520 | No alias | RING-H2 finger protein, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os05g40020 | No alias | RING-H2 finger protein, putative, expressed | 0.03 | Orthogroups_2024-Update | |
MA_189618g0010 | No alias | (at1g49230 : 127.0) RING/U-box superfamily protein;... | 0.03 | Orthogroups_2024-Update | |
MA_569551g0010 | No alias | no hits & (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
MA_94359g0010 | No alias | (at4g35480 : 121.0) Encodes a putative RING-H2 finger... | 0.03 | Orthogroups_2024-Update | |
Potri.002G006400 | No alias | RING/U-box superfamily protein | 0.05 | Orthogroups_2024-Update | |
Pp1s249_56V6 | No alias | ring finger | 0.02 | Orthogroups_2024-Update | |
Pp1s71_162V6 | No alias | ring finger | 0.03 | Orthogroups_2024-Update | |
Seita.7G110600.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
Sopen03g033270 | No alias | Ring finger domain | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000178 | exosome (RNase complex) | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0004478 | methionine adenosyltransferase activity | IEP | Predicted GO |
MF | GO:0004853 | uroporphyrinogen decarboxylase activity | IEP | Predicted GO |
CC | GO:0005634 | nucleus | IEP | Predicted GO |
CC | GO:0005694 | chromosome | IEP | Predicted GO |
CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006556 | S-adenosylmethionine biosynthetic process | IEP | Predicted GO |
BP | GO:0006694 | steroid biosynthetic process | IEP | Predicted GO |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0008202 | steroid metabolic process | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
BP | GO:0016571 | histone methylation | IEP | Predicted GO |
MF | GO:0016636 | oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor | IEP | Predicted GO |
MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | Predicted GO |
BP | GO:0018022 | peptidyl-lysine methylation | IEP | Predicted GO |
MF | GO:0030599 | pectinesterase activity | IEP | Predicted GO |
CC | GO:0034457 | Mpp10 complex | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034968 | histone lysine methylation | IEP | Predicted GO |
BP | GO:0042545 | cell wall modification | IEP | Predicted GO |
CC | GO:0042575 | DNA polymerase complex | IEP | Predicted GO |
CC | GO:0043226 | organelle | IEP | Predicted GO |
CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043625 | delta DNA polymerase complex | IEP | Predicted GO |
CC | GO:0044452 | nucleolar part | IEP | Predicted GO |
CC | GO:0044454 | nuclear chromosome part | IEP | Predicted GO |
BP | GO:0045229 | external encapsulating structure organization | IEP | Predicted GO |
BP | GO:0046500 | S-adenosylmethionine metabolic process | IEP | Predicted GO |
BP | GO:0051188 | cofactor biosynthetic process | IEP | Predicted GO |
MF | GO:0051743 | red chlorophyll catabolite reductase activity | IEP | Predicted GO |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Predicted GO |
BP | GO:0071555 | cell wall organization | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
CC | GO:1905354 | exoribonuclease complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001841 | Znf_RING | 125 | 168 |
No external refs found! |