1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.F00420.1

Brara.F00420.1


Description : RNA editing factor *(OZ)


Gene families : OG_42_0001998 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001998_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F00420.1
Cluster HCAA Clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
426987 No alias zinc finger (Ran-binding) family protein 0.02 Orthogroups_2024-Update
438605 No alias zinc finger (Ran-binding) family protein 0.03 Orthogroups_2024-Update
At1g48570 No alias T1N15.19 [Source:UniProtKB/TrEMBL;Acc:Q9LP67] 0.04 Orthogroups_2024-Update
Bradi1g11210 No alias Ran BP2/NZF zinc finger-like superfamily protein 0.09 Orthogroups_2024-Update
GRMZM2G090190 No alias Ran BP2/NZF zinc finger-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G084500 No alias Ran BP2/NZF zinc finger-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G102100 No alias zinc finger (Ran-binding) family protein 0.04 Orthogroups_2024-Update
Kfl00181_0230 kfl00181_0230_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
LOC_Os03g50120 No alias zinc finger family protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10426200g0010 No alias (at1g55040 : 288.0) zinc finger (Ran-binding) family... 0.03 Orthogroups_2024-Update
Mp5g05510.1 No alias RNA editing factor (OZ-type) 0.03 Orthogroups_2024-Update
Pp1s65_73V6 No alias zinc finger (ran-binding) family protein 0.03 Orthogroups_2024-Update
Seita.9G121200.1 No alias RNA editing factor *(OZ) 0.05 Orthogroups_2024-Update
Sobic.001G116800.1 No alias RNA editing factor *(OZ) 0.03 Orthogroups_2024-Update
Sobic.001G119600.1 No alias RNA editing factor *(OZ) 0.03 Orthogroups_2024-Update
Solyc01g099230 No alias Zinc finger family protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc03g118680 No alias Zinc finger protein (AHRD V3.3 *** W9RJ16_9ROSA) 0.05 Orthogroups_2024-Update
Sopen01g042780 No alias Zn-finger in Ran binding protein and others 0.03 Orthogroups_2024-Update
Sopen03g037640 No alias Zn-finger in Ran binding protein and others 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006282 regulation of DNA repair IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Predicted GO
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
MF GO:0070006 metalloaminopeptidase activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0080134 regulation of response to stress IEP Predicted GO
BP GO:0080135 regulation of cellular response to stress IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:2001020 regulation of response to DNA damage stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 338 361
IPR001876 Znf_RanBP2 299 327
No external refs found!