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  5. Brara.F01827.1

Brara.F01827.1


Description : histone *(H2B)


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F01827.1
Cluster HCAA Clusters: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
426757 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
A4A49_60323 No alias putative histone h2b.1 0.03 Orthogroups_2024-Update
At2g37470 No alias Histone H2B.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUS0] 0.07 Orthogroups_2024-Update
At3g09480 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V4X7] 0.03 Orthogroups_2024-Update
At3g46030 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178VGU6] 0.07 Orthogroups_2024-Update
At5g02570 No alias Histone H2B.9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ45] 0.03 Orthogroups_2024-Update
At5g22880 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:Q1H5F7] 0.03 Orthogroups_2024-Update
At5g59910 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:Q1H5F2] 0.04 Orthogroups_2024-Update
Cre06.g264800 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre06.g264900 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre06.g266750 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g268250 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g273850 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g274250 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre06.g274750 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre06.g276550 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g276900 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g504550 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g504700 No alias Histone superfamily protein 0.07 Orthogroups_2024-Update
Cre12.g505600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g506200 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Cre13.g570050 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre17.g708600 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre17.g711750 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G046841 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G141432 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G305027 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G306258 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G401147 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G472696 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G172500 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.10G198500 No alias Histone superfamily protein 0.07 Orthogroups_2024-Update
Glyma.11G141600 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.11G141800 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.11G142100 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.12G065100 No alias Histone superfamily protein 0.08 Orthogroups_2024-Update
Glyma.12G065200 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G065400 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.13G132100 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G321600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G173400 No alias Histone superfamily protein 0.07 Orthogroups_2024-Update
Glyma.20G191600 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
HORVU1Hr1G056530.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU1Hr1G058440.4 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU1Hr1G078480.6 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU1Hr1G085540.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU3Hr1G013530.1 No alias histone *(H2B) 0.06 Orthogroups_2024-Update
HORVU3Hr1G013680.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU3Hr1G086610.4 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU4Hr1G009040.2 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU5Hr1G094500.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU7Hr1G110310.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
Kfl01110_0020 kfl01110_0020_v1.... (p16868|h2b4_volca : 167.0) Histone H2B.4 (H2B-IV) -... 0.03 Orthogroups_2024-Update
MA_17795g0010 No alias (o22582|h2b_goshi : 174.0) Histone H2B - Gossypium... 0.03 Orthogroups_2024-Update
Mp4g13450.1 No alias histone (H2B) 0.02 Orthogroups_2024-Update
PSME_00025825-RA No alias (at5g22880 : 173.0) Encodes a histone 2B (H2B) protein.... 0.04 Orthogroups_2024-Update
Potri.008G029900 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Seita.2G294900.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Sobic.003G200501.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
Sobic.007G149600.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
Solyc02g038690 No alias Histone H2B (AHRD V3.3 *** K4B5W3_SOLLC) 0.09 Orthogroups_2024-Update
Solyc03g071620 No alias Histone H2B (AHRD V3.3 *** K4BHJ2_SOLLC) 0.05 Orthogroups_2024-Update
Solyc05g055440 No alias Histone H2B (AHRD V3.3 *** K4C2M0_SOLLC) 0.09 Orthogroups_2024-Update
Solyc06g005390 No alias Histone H2B (AHRD V3.3 *** K4C323_SOLLC) 0.1 Orthogroups_2024-Update
Solyc06g074780 No alias Histone H2B (AHRD V3.3 *** K4C9J5_SOLLC) 0.09 Orthogroups_2024-Update
Solyc06g074790 No alias Histone H2B (AHRD V3.3 *** M1AAN4_SOLTU) 0.09 Orthogroups_2024-Update
Solyc06g075800 No alias Histone H2B (AHRD V3.3 *** K4C9U5_SOLLC) 0.06 Orthogroups_2024-Update
Solyc11g007920 No alias Histone H2B (AHRD V3.3 *** K4D553_SOLLC) 0.1 Orthogroups_2024-Update
Solyc11g007930 No alias Histone H2B (AHRD V3.3 *** K4D554_SOLLC) 0.07 Orthogroups_2024-Update
Solyc11g066430 No alias histone H2B 0.09 Orthogroups_2024-Update
Sopen03g019890 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen05g033890 No alias Core histone H2A/H2B/H3/H4 0.08 Orthogroups_2024-Update
Sopen06g031230 No alias Core histone H2A/H2B/H3/H4 0.08 Orthogroups_2024-Update
Sopen06g032230 No alias Core histone H2A/H2B/H3/H4 0.08 Orthogroups_2024-Update
Sopen11g003790 No alias Core histone H2A/H2B/H3/H4 0.07 Orthogroups_2024-Update
Sopen11g003800 No alias Core histone H2A/H2B/H3/H4 0.1 Orthogroups_2024-Update
Sopen11g026180 No alias Core histone H2A/H2B/H3/H4 0.1 Orthogroups_2024-Update
Sopen12g006850 No alias Core histone H2A/H2B/H3/H4 0.08 Orthogroups_2024-Update
evm.model.tig00000944.18 No alias (p16868|h2b4_volca : 122.0) Histone H2B.4 (H2B-IV) -... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
BP GO:0000724 double-strand break repair via homologous recombination IEP Predicted GO
BP GO:0000725 recombinational repair IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004109 coproporphyrinogen oxidase activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 5 113
No external refs found!