Brara.F02468.1

Description : regulatory factor *(DG1) of plastid-encoded RNA polymerase activity

Gene families : OG_42_0004203 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004203_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.F02468.1
Cluster	HCAA Clusters: Cluster_348

Target	Alias	Description	ECC score	Gene Family Method	Actions
At5g67570	No alias	Pentatricopeptide repeat-containing protein At5g67570,...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predicted GO
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predicted GO
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predicted GO
MF	GO:0004222	metalloendopeptidase activity	IEP	Predicted GO
CC	GO:0005643	nuclear pore	IEP	Predicted GO
CC	GO:0005667	transcription factor complex	IEP	Predicted GO
BP	GO:0006397	mRNA processing	IEP	Predicted GO
BP	GO:0006913	nucleocytoplasmic transport	IEP	Predicted GO
MF	GO:0008171	O-methyltransferase activity	IEP	Predicted GO
BP	GO:0008380	RNA splicing	IEP	Predicted GO
BP	GO:0016485	protein processing	IEP	Predicted GO
MF	GO:0017056	structural constituent of nuclear pore	IEP	Predicted GO
BP	GO:0051169	nuclear transport	IEP	Predicted GO
BP	GO:0051604	protein maturation	IEP	Predicted GO
BP	GO:0071586	CAAX-box protein processing	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	345	393
IPR002885	Pentatricopeptide_repeat	491	519
IPR002885	Pentatricopeptide_repeat	420	450
IPR002885	Pentatricopeptide_repeat	265	291
IPR002885	Pentatricopeptide_repeat	522	571

External Links

No external refs found!