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  5. Brara.F02973.1

Brara.F02973.1


Description : C2H2 subclass ZFP transcription factor


Gene families : OG_42_0000024 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000024_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F02973.1
Cluster HCAA Clusters: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
A4A49_12907 No alias zinc finger protein 4 0.03 Orthogroups_2024-Update
A4A49_18298 No alias zinc finger protein 4 0.03 Orthogroups_2024-Update
At3g58070 No alias GIS [Source:UniProtKB/TrEMBL;Acc:A0A178V7D1] 0.03 Orthogroups_2024-Update
At5g10970 No alias C2H2 and C2HC zinc fingers superfamily protein... 0.04 Orthogroups_2024-Update
Brara.B03462.1 No alias C2H2 subclass ZFP transcription factor 0.03 Orthogroups_2024-Update
Brara.G02050.1 No alias C2H2 subclass ZFP transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G008712 No alias zinc finger protein 7 0.03 Orthogroups_2024-Update
GRMZM2G082686 No alias zinc finger protein 7 0.03 Orthogroups_2024-Update
Glyma.09G107400 No alias zinc finger protein 8 0.03 Orthogroups_2024-Update
Glyma.10G260600 No alias zinc finger protein 7 0.03 Orthogroups_2024-Update
HORVU5Hr1G066750.1 No alias C2H2 subclass ZFP transcription factor 0.02 Orthogroups_2024-Update
LOC_Os01g32920 No alias ZOS1-08 - C2H2 zinc finger protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g05900 No alias ZOS7-02 - C2H2 zinc finger protein, expressed 0.03 Orthogroups_2024-Update
Mp1g25140.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Potri.004G097900 No alias zinc finger protein 6 0.04 Orthogroups_2024-Update
Potri.014G178200 No alias zinc finger protein 7 0.03 Orthogroups_2024-Update
Pp1s173_9V6 No alias zinc finger protein 0.02 Orthogroups_2024-Update
Seita.2G375500.1 No alias C2H2 subclass ZFP transcription factor 0.03 Orthogroups_2024-Update
Seita.9G388000.1 No alias C2H2 subclass ZFP transcription factor 0.02 Orthogroups_2024-Update
Sobic.002G001700.1 No alias C2H2 subclass ZFP transcription factor 0.04 Orthogroups_2024-Update
Solyc05g009180 No alias LOW QUALITY:Zinc finger family protein (AHRD V3.3 ***... 0.06 Orthogroups_2024-Update
Sopen05g005180 No alias hypothetical protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0007030 Golgi organization IEP Predicted GO
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!