- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : component *(TRM11) of TRM11-TRM112 tRNA guanosine-methyltransferase complex
Gene families : OG_42_0006012 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006012_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.F03274.1 | |
| Cluster | HCAA Clusters: Cluster_181 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At3g26410 | No alias | tRNA modification 11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LIN4] | 0.05 | Orthogroups_2024-Update | |
| Bradi3g45810 | No alias | methyltransferases;nucleic acid binding | 0.03 | Orthogroups_2024-Update | |
| Cre08.g359100 | No alias | methyltransferases;nucleic acid binding | 0.08 | Orthogroups_2024-Update | |
| HORVU3Hr1G023160.3 | No alias | component *(TRM11) of TRM11-TRM112 tRNA... | 0.05 | Orthogroups_2024-Update | |
| Pp1s142_26V6 | No alias | rna methylase | 0.02 | Orthogroups_2024-Update | |
| Seita.1G193700.1 | No alias | component *(TRM11) of TRM11-TRM112 tRNA... | 0.08 | Orthogroups_2024-Update | |
| Sobic.004G177100.1 | No alias | component *(TRM11) of TRM11-TRM112 tRNA... | 0.14 | Orthogroups_2024-Update | |
| Solyc10g047120 | No alias | tRNA (Guanine(10)-N2)-methyltransferase (AHRD V3.3 ***... | 0.05 | Orthogroups_2024-Update | |
| evm.model.contig_4439.4 | No alias | (at3g26410 : 186.0) methyltransferases;nucleic acid... | 0.04 | Orthogroups_2024-Update | |
| evm.model.tig00000093.66 | No alias | (at3g26410 : 83.6) methyltransferases;nucleic acid... | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
| CC | GO:0000178 | exosome (RNase complex) | IEP | Predicted GO |
| BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predicted GO |
| MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
| MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003697 | single-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0004826 | phenylalanine-tRNA ligase activity | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0005525 | GTP binding | IEP | Predicted GO |
| CC | GO:0005730 | nucleolus | IEP | Predicted GO |
| CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Predicted GO |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006432 | phenylalanyl-tRNA aminoacylation | IEP | Predicted GO |
| MF | GO:0008134 | transcription factor binding | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| BP | GO:0030490 | maturation of SSU-rRNA | IEP | Predicted GO |
| CC | GO:0030684 | preribosome | IEP | Predicted GO |
| CC | GO:0030686 | 90S preribosome | IEP | Predicted GO |
| CC | GO:0030688 | preribosome, small subunit precursor | IEP | Predicted GO |
| MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
| MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
| MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
| CC | GO:0034457 | Mpp10 complex | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
| MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
| MF | GO:0043168 | anion binding | IEP | Predicted GO |
| CC | GO:0044428 | nuclear part | IEP | Predicted GO |
| CC | GO:0044445 | cytosolic part | IEP | Predicted GO |
| CC | GO:0044452 | nucleolar part | IEP | Predicted GO |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| CC | GO:0090730 | Las1 complex | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
| CC | GO:1902555 | endoribonuclease complex | IEP | Predicted GO |
| CC | GO:1902911 | protein kinase complex | IEP | Predicted GO |
| CC | GO:1905348 | endonuclease complex | IEP | Predicted GO |
| CC | GO:1905354 | exoribonuclease complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000241 | RNA_methylase_dom | 189 | 310 |
| No external refs found! |