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  5. Brara.F03504.1

Brara.F03504.1


Description : Unknown function


Gene families : OG_42_0000651 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000651_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.F03504.1
Cluster HCAA Clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
437743 No alias DEA(D/H)-box RNA helicase family protein 0.02 Orthogroups_2024-Update
At2g35920 No alias RNA helicase family protein [Source:TAIR;Acc:AT2G35920] 0.03 Orthogroups_2024-Update
Cre03.g171650 No alias RNA helicase family protein 0.01 Orthogroups_2024-Update
Glyma.10G082300 No alias RNA helicase family protein 0.04 Orthogroups_2024-Update
Solyc01g103690 No alias ATP-dependent RNA helicase (AHRD V3.3 *-* A0A072V3N4_MEDTR) 0.03 Orthogroups_2024-Update
Solyc03g118920 No alias ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9S355_RICCO) 0.03 Orthogroups_2024-Update
Sopen01g002960 No alias Helicase associated domain (HA2) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0004386 helicase activity IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0003919 FMN adenylyltransferase activity IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
BP GO:0007051 spindle organization IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051225 spindle assembly IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
CC GO:0070652 HAUS complex IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011709 DUF1605 859 939
IPR011545 DEAD/DEAH_box_helicase_dom 251 402
IPR007502 Helicase-assoc_dom 703 780
IPR014720 dsRBD_dom 1047 1109
IPR001650 Helicase_C 509 639
No external refs found!