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  5. Brara.G00750.1

Brara.G00750.1


Description : component *(NRPA2) of RNA polymerase I complex


Gene families : OG_42_0005017 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G00750.1
Cluster HCAA Clusters: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
At1g29940 No alias DNA-directed RNA polymerase subunit beta... 0.04 Orthogroups_2024-Update
Bradi3g29917 No alias nuclear RNA polymerase A2 0.06 Orthogroups_2024-Update
Cre07.g322176 No alias nuclear RNA polymerase A2 0.07 Orthogroups_2024-Update
GRMZM2G388892 No alias nuclear RNA polymerase A2 0.02 Orthogroups_2024-Update
Glyma.13G192600 No alias nuclear RNA polymerase A2 0.03 Orthogroups_2024-Update
Mp3g15820.1 No alias subunit 2 of Pol I RNA polymerase 0.07 Orthogroups_2024-Update
Potri.001G030750 No alias nuclear RNA polymerase A2 0.05 Orthogroups_2024-Update
Pp1s169_131V6 No alias dna-directed rna polymerase i 0.03 Orthogroups_2024-Update
Seita.9G206500.1 No alias component *(NRPA2) of RNA polymerase I complex 0.06 Orthogroups_2024-Update
Sobic.004G019200.1 No alias component *(NRPA2) of RNA polymerase I complex 0.03 Orthogroups_2024-Update
Solyc01g086710 No alias DNA-directed RNA polymerase subunit beta (AHRD V3.3 ***... 0.08 Orthogroups_2024-Update
Sopen01g033710 No alias RNA polymerase Rpb2, domain 6 0.06 Orthogroups_2024-Update
evm.model.tig00021348.37 No alias (at1g29940 : 144.0) Encodes a subunit of RNA polymerase... 0.06 Orthogroups_2024-Update
evm.model.tig00021348.38 No alias (at1g29940 : 348.0) Encodes a subunit of RNA polymerase... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA 16Dec
CC GO:0005634 nucleus IEA 16Dec
BP GO:0006351 transcription, DNA-templated IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004659 prenyltransferase activity IEP Predicted GO
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0005347 ATP transmembrane transporter activity IEP Predicted GO
MF GO:0005471 ATP:ADP antiporter activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006862 nucleotide transport IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008318 protein prenyltransferase activity IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0008514 organic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015215 nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015217 ADP transmembrane transporter activity IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015301 anion:anion antiporter activity IEP Predicted GO
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Predicted GO
BP GO:0015748 organophosphate ester transport IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0018342 protein prenylation IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0097354 prenylation IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0099516 ion antiporter activity IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR009674 Rpa2_dom_4 581 638
IPR007645 RNA_pol_Rpb2_3 464 527
IPR007644 RNA_pol_bsu_protrusion 20 410
IPR007120 DNA-dir_RNAP_su2_dom 693 973
IPR007642 RNA_pol_Rpb2_2 205 376
No external refs found!