1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.G00820.1

Brara.G00820.1


Description : indole-3-acetic acid-amido synthetase *(GH3)


Gene families : OG_42_0000128 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G00820.1
Cluster HCAA Clusters: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
A4A49_37324 No alias indole-3-acetic acid-amido synthetase gh3.6 0.03 Orthogroups_2024-Update
At5g13320 No alias Auxin-responsive GH3 family protein [Source:TAIR;Acc:AT5G13320] 0.03 Orthogroups_2024-Update
At5g13380 No alias Auxin-responsive GH3 family protein... 0.03 Orthogroups_2024-Update
Bradi1g22830 No alias Auxin-responsive GH3 family protein 0.04 Orthogroups_2024-Update
Brara.B01373.1 No alias indole-3-acetic acid-amido synthetase *(GH3) 0.03 Orthogroups_2024-Update
Brara.F00701.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I05218.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU1Hr1G092890.5 No alias jasmonoyl-amino acid synthetase *(JAR1) 0.03 Orthogroups_2024-Update
LOC_Os01g12160 No alias OsGH3.3 - Probable indole-3-acetic acid-amido... 0.02 Orthogroups_2024-Update
Pp1s323_82V6 No alias putative auxin-responsive GH3 protein [Oryza sativa... 0.03 Orthogroups_2024-Update
Seita.9G215200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc10g009600 No alias Auxin-responsive GH3 family protein (AHRD V3.3 *** AT2G46370.4) 0.03 Orthogroups_2024-Update
Solyc10g009610 No alias Auxin-responsive GH3 family protein (AHRD V3.3 *** AT2G46370.4) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0048364 root development IEP Predicted GO
BP GO:0048367 shoot system development IEP Predicted GO
BP GO:0048731 system development IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
BP GO:0099402 plant organ development IEP Predicted GO
MF GO:1901981 phosphatidylinositol phosphate binding IEP Predicted GO
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR004993 GH3 17 578
No external refs found!