- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : rRNA processing factor *(IRP1)
Gene families : OG_42_0008200 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008200_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.G02448.1 | |
| Cluster | HCAA Clusters: Cluster_193 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| LOC_Os04g39090 | No alias | SAM domain containing protein, putative, expressed | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | 16Dec |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000278 | mitotic cell cycle | IEP | Predicted GO |
| CC | GO:0000775 | chromosome, centromeric region | IEP | Predicted GO |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Predicted GO |
| BP | GO:0007049 | cell cycle | IEP | Predicted GO |
| MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Predicted GO |
| BP | GO:0016567 | protein ubiquitination | IEP | Predicted GO |
| MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Predicted GO |
| MF | GO:0019781 | NEDD8 activating enzyme activity | IEP | Predicted GO |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Predicted GO |
| MF | GO:0032182 | ubiquitin-like protein binding | IEP | Predicted GO |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | Predicted GO |
| MF | GO:0042393 | histone binding | IEP | Predicted GO |
| MF | GO:0043130 | ubiquitin binding | IEP | Predicted GO |
| BP | GO:0045116 | protein neddylation | IEP | Predicted GO |
| MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Predicted GO |
| MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Predicted GO |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Predicted GO |
| CC | GO:0098687 | chromosomal region | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001660 | SAM | 454 | 509 |
| No external refs found! |