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  5. Brara.G03324.1

Brara.G03324.1


Description : associated component *(AFR) of histone deacetylase machineries


Gene families : OG_42_0001751 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001751_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.G03324.1
Cluster HCAA Clusters: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
LOC_Os10g21460 No alias expressed protein 0.03 Orthogroups_2024-Update
PSME_00001866-RA No alias (at1g19330 : 230.0) unknown protein; FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
PSME_00036392-RA No alias (at1g19330 : 174.0) unknown protein; FUNCTIONS IN:... 0.04 Orthogroups_2024-Update
Potri.003G130100 No alias Function unknown 0.03 Orthogroups_2024-Update
Solyc04g079930 No alias Histone deacetylase complex subunit SAP30 (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:1901981 phosphatidylinositol phosphate binding IEP Predicted GO
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR025718 SAP30_Sin3-bd 167 220
No external refs found!