At2g25360

Description : RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:Q9SKL2]

Gene families : OG_42_0000330 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At2g25360
Cluster	HCCA clusters: Cluster_191

Target	Alias	Description	ECC score	Gene Family Method
A4A49_15198	No alias	atp-dependent rna helicase deah12, chloroplastic	0.03	Orthogroups_2024-Update
A4A49_40485	No alias	putative e3 ubiquitin-protein ligase ari8	0.03	Orthogroups_2024-Update
At2g25370	No alias	RBR-type E3 ubiquitin transferase...	0.04	Orthogroups_2024-Update
At2g26130	No alias	RBR-type E3 ubiquitin transferase...	0.03	Orthogroups_2024-Update
At3g45460	No alias	RBR-type E3 ubiquitin transferase...	0.03	Orthogroups_2024-Update
HORVU2Hr1G121290.2	No alias	Unknown function	0.03	Orthogroups_2024-Update
Potri.006G104700	No alias	zinc finger (C3HC4-type RING finger) family protein	0.03	Orthogroups_2024-Update
Solyc03g115920	No alias	RING/U-box superfamily protein (AHRD V3.3 *** AT3G14250.1)	0.03	Orthogroups_2024-Update
Sopen03g034920	No alias	IBR domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	InterProScan predictions
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006643	membrane lipid metabolic process	IEP	Predicted GO
BP	GO:0006664	glycolipid metabolic process	IEP	Predicted GO
MF	GO:0008146	sulfotransferase activity	IEP	Predicted GO
MF	GO:0008236	serine-type peptidase activity	IEP	Predicted GO
MF	GO:0009029	tetraacyldisaccharide 4'-kinase activity	IEP	Predicted GO
BP	GO:0009245	lipid A biosynthetic process	IEP	Predicted GO
BP	GO:0009247	glycolipid biosynthetic process	IEP	Predicted GO
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Predicted GO
MF	GO:0017171	serine hydrolase activity	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Predicted GO
BP	GO:0046493	lipid A metabolic process	IEP	Predicted GO
BP	GO:1901269	lipooligosaccharide metabolic process	IEP	Predicted GO
BP	GO:1901271	lipooligosaccharide biosynthetic process	IEP	Predicted GO
BP	GO:1903509	liposaccharide metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002156	RNaseH_domain	1	78
IPR002867	IBR_dom	159	224
IPR002867	IBR_dom	238	292
IPR018957	Znf_C3HC4_RING-type	90	124

External Links

No external refs found!