1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.H00280.1

Brara.H00280.1


Description : regulatory factor *(RBP45/47) of mRNA stress granule formation


Gene families : OG_42_0000344 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000344_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H00280.1
Cluster HCAA Clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
232989 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
A4A49_09844 No alias polyadenylate-binding protein rbp47c 0.02 Orthogroups_2024-Update
At4g27000 No alias Polyadenylate-binding protein RBP45C... 0.03 Orthogroups_2024-Update
Brara.A01678.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.05 Orthogroups_2024-Update
Brara.A02894.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.03 Orthogroups_2024-Update
Brara.E01696.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.04 Orthogroups_2024-Update
Brara.J01649.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.03 Orthogroups_2024-Update
GRMZM2G168163 No alias RNA-binding protein 47C 0.03 Orthogroups_2024-Update
GRMZM2G420713 No alias RNA-binding protein 47C\' 0.03 Orthogroups_2024-Update
Glyma.02G134400 No alias RNA-binding protein 47B 0.03 Orthogroups_2024-Update
Glyma.12G057300 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
LOC_Os04g53440 No alias RNA recognition motif containing protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00056827-RA No alias (at1g11650 : 300.0) RBP45B; FUNCTIONS IN: RNA binding;... 0.03 Orthogroups_2024-Update
Pp1s391_69V6 No alias nuclear acid binding 0.03 Orthogroups_2024-Update
Seita.2G234200.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.03 Orthogroups_2024-Update
Sobic.006G222400.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007051 spindle organization IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0051225 spindle assembly IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
CC GO:0070652 HAUS complex IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 195 264
IPR000504 RRM_dom 308 371
IPR000504 RRM_dom 100 165
No external refs found!