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  5. Brara.H00489.1

Brara.H00489.1


Description : pectate lyase & EC_4.2 carbon-oxygen lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H00489.1
Cluster HCAA Clusters: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
A4A49_35755 No alias putative pectate lyase p59 0.04 Orthogroups_2024-Update
Brara.I00410.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Glyma.04G191100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
MA_10430145g0020 No alias (at5g48900 : 488.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00020308-RA No alias (at4g13710 : 598.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00023843-RA No alias (at4g13710 : 610.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00048976-RA No alias (at4g24780 : 542.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Pp1s563_1V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Solyc03g058890 No alias Pectate lyase (AHRD V3.3 *** K4BGT7_SOLLC) 0.02 Orthogroups_2024-Update
Solyc05g014000 No alias Pectate lyase (AHRD V3.3 *** M1AQF5_SOLTU) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 189 366
No external refs found!