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  5. Brara.H01515.1

Brara.H01515.1


Description : E3 ubiquitin ligase *(RMA/MUSE)


Gene families : OG_42_0000548 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000548_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H01515.1
Cluster HCAA Clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Glyma.12G112000 No alias RING membrane-anchor 1 0.03 Orthogroups_2024-Update
Glyma.13G297700 No alias RING membrane-anchor 1 0.03 Orthogroups_2024-Update
Potri.005G127900 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Sobic.004G228100.2 No alias E3 ubiquitin ligase *(RMA/MUSE) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 41 88
No external refs found!