1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.H01834.1

Brara.H01834.1


Description : BBX class-IV transcription factor


Gene families : OG_42_0004045 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004045_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.H01834.1
Cluster HCAA Clusters: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
111647 No alias B-box type zinc finger family protein 0.03 Orthogroups_2024-Update
A4A49_04905 No alias b-box zinc finger protein 19 0.05 Orthogroups_2024-Update
At2g21320 No alias B-box zinc finger protein 18... 0.05 Orthogroups_2024-Update
At4g38960 No alias B-box type zinc finger family protein... 0.07 Orthogroups_2024-Update
Cre03.g182700 No alias CONSTANS-like 1 0.02 Orthogroups_2024-Update
MA_10433513g0010 No alias (at4g38960 : 134.0) B-box type zinc finger family... 0.03 Orthogroups_2024-Update
Potri.004G162600 No alias B-box type zinc finger family protein 0.03 Orthogroups_2024-Update
Pp1s207_121V6 No alias F3K23.8; zinc finger (B-box type) family protein... 0.03 Orthogroups_2024-Update
Seita.2G284200.1 No alias BBX class-IV transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G273300.1 No alias BBX class-IV transcription factor 0.03 Orthogroups_2024-Update
Solyc01g110370 No alias Zinc finger, B-box (AHRD V3.3 *** A0A118K2C5_CYNCS) 0.03 Orthogroups_2024-Update
Solyc02g084420 No alias B-box zinc finger family protein (AHRD V3.3 *** AT2G21320.1) 0.03 Orthogroups_2024-Update
Sopen02g029130 No alias B-box zinc finger 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
BP GO:0010921 regulation of phosphatase activity IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0019310 inositol catabolic process IEP Predicted GO
MF GO:0019902 phosphatase binding IEP Predicted GO
MF GO:0019903 protein phosphatase binding IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0035303 regulation of dephosphorylation IEP Predicted GO
BP GO:0035304 regulation of protein dephosphorylation IEP Predicted GO
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044275 cellular carbohydrate catabolic process IEP Predicted GO
BP GO:0046164 alcohol catabolic process IEP Predicted GO
BP GO:0046174 polyol catabolic process IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
MF GO:0050113 inositol oxygenase activity IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
BP GO:1901616 organic hydroxy compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000315 Znf_B-box 52 91
No external refs found!