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  5. Brara.I00454.1

Brara.I00454.1


Description : component *(eL18) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0002023 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002023_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I00454.1
Cluster HCAA Clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
267976 No alias ribosomal protein L18 0.08 Orthogroups_2024-Update
A4A49_59911 No alias 60s ribosomal protein l18-2 0.04 Orthogroups_2024-Update
A4A49_64192 No alias 60s ribosomal protein l18-2 0.08 Orthogroups_2024-Update
At3g05590 No alias RPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9] 0.04 Orthogroups_2024-Update
At5g27850 No alias 60S ribosomal protein L18-3... 0.07 Orthogroups_2024-Update
Bradi1g17970 No alias Ribosomal protein L18e/L15 superfamily protein 0.07 Orthogroups_2024-Update
Bradi1g62930 No alias ribosomal protein L18 0.08 Orthogroups_2024-Update
Bradi2g35090 No alias Ribosomal protein L18e/L15 superfamily protein 0.18 Orthogroups_2024-Update
Cre12.g512600 No alias ribosomal protein L18 0.19 Orthogroups_2024-Update
GRMZM2G104025 No alias Ribosomal protein L18e/L15 superfamily protein 0.07 Orthogroups_2024-Update
GRMZM5G803952 No alias Ribosomal protein L18e/L15 superfamily protein 0.09 Orthogroups_2024-Update
Glyma.03G215300 No alias Ribosomal protein L18e/L15 superfamily protein 0.09 Orthogroups_2024-Update
Glyma.03G234600 No alias ribosomal protein L18 0.07 Orthogroups_2024-Update
Glyma.10G150800 No alias ribosomal protein L18 0.08 Orthogroups_2024-Update
Glyma.19G211800 No alias Ribosomal protein L18e/L15 superfamily protein 0.07 Orthogroups_2024-Update
Glyma.19G232100 No alias ribosomal protein L18 0.05 Orthogroups_2024-Update
Glyma.20G237400 No alias ribosomal protein L18 0.17 Orthogroups_2024-Update
HORVU1Hr1G022570.1 No alias component *(eL18) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
HORVU2Hr1G018820.1 No alias component *(eL18) of large ribosomal-subunit (LSU) proteome 0.11 Orthogroups_2024-Update
Kfl00174_0110 kfl00174_0110_v1.1 (at3g05590 : 286.0) Encodes cytoplasmic ribosomal... 0.03 Orthogroups_2024-Update
LOC_Os03g22180 No alias 60S ribosomal protein L18-3, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os05g06310 No alias 60S ribosomal protein L18-3, putative, expressed 0.02 Orthogroups_2024-Update
Mp1g22500.1 No alias component RPL18 of LSU proteome component 0.07 Orthogroups_2024-Update
PSME_00010533-RA No alias (at5g27850 : 302.0) Ribosomal protein L18e/L15... 0.09 Orthogroups_2024-Update
Potri.002G202800 No alias ribosomal protein L18 0.06 Orthogroups_2024-Update
Potri.005G023500 No alias ribosomal protein L18 0.06 Orthogroups_2024-Update
Potri.014G127300 No alias ribosomal protein L18 0.11 Orthogroups_2024-Update
Pp1s2_233V6 No alias 60s ribosomal protein l18 0.05 Orthogroups_2024-Update
Pp1s304_9V6 No alias 60s ribosomal protein l18 0.22 Orthogroups_2024-Update
Pp1s45_11V6 No alias 60s ribosomal protein l18 0.12 Orthogroups_2024-Update
Pp1s45_191V6 No alias 60s ribosomal protein l18 0.05 Orthogroups_2024-Update
Pp1s536_8V6 No alias 60s ribosomal protein l18 0.05 Orthogroups_2024-Update
Seita.2G430300.1 No alias component *(eL18) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Seita.7G267500.1 No alias component *(eL18) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Seita.9G410200.1 No alias component *(eL18) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Sobic.001G377800.2 No alias component *(eL18) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Sobic.002G415500.1 No alias component *(eL18) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Sobic.009G050300.1 No alias component *(eL18) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Solyc01g099900 No alias 60S ribosomal protein L18, putative (AHRD V3.3 *** B9RFD6_RICCO) 0.17 Orthogroups_2024-Update
Solyc09g075290 No alias 60S ribosomal protein L18, putative (AHRD V3.3 *** B9SAT7_RICCO) 0.13 Orthogroups_2024-Update
Sopen01g043420 No alias Ribosomal protein L18e/L15 0.22 Orthogroups_2024-Update
Sopen09g030080 No alias Ribosomal protein L18e/L15 0.17 Orthogroups_2024-Update
evm.model.contig_3399.2 No alias (at3g05590 : 193.0) Encodes cytoplasmic ribosomal... 0.26 Orthogroups_2024-Update
evm.model.tig00000142.18 No alias (o65729|rl18_cicar : 134.0) 60S ribosomal protein L18... 0.13 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004455 ketol-acid reductoisomerase activity IEP Predicted GO
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Predicted GO
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006144 purine nucleobase metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009113 purine nucleobase biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
MF GO:0042586 peptide deformylase activity IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR021131 Ribosomal_L18e/L15P 2 187
No external refs found!