- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : GARP subgroup PHL transcription factor & transcription factor *(PHR1)
Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.I01162.1 | |
| Cluster | HCAA Clusters: Cluster_205 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_12162 | No alias | protein phosphate starvation response 1 | 0.03 | Orthogroups_2024-Update | |
| A4A49_31971 | No alias | myb family transcription factor phl11 | 0.02 | Orthogroups_2024-Update | |
| AC234155.1_FG002 | No alias | Homeodomain-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Brara.A03315.1 | No alias | GARP subgroup PHL transcription factor | 0.03 | Orthogroups_2024-Update | |
| Brara.E03471.1 | No alias | GARP subgroup PHL transcription factor | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G035370 | No alias | myb-like HTH transcriptional regulator family protein | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G069525 | No alias | Homeodomain-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G106185 | No alias | Homeodomain-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.06G035700 | No alias | Homeodomain-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Glyma.10G039700 | No alias | phosphate starvation response 1 | 0.04 | Orthogroups_2024-Update | |
| HORVU1Hr1G056580.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G060310.22 | No alias | KANADI-type transcription factor | 0.03 | Orthogroups_2024-Update | |
| LOC_Os09g23200 | No alias | KANADI1, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os12g01490 | No alias | MYB family transcription factor, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| MA_1432g0010 | No alias | (at3g13040 : 86.3) myb-like HTH transcriptional... | 0.04 | Orthogroups_2024-Update | |
| PSME_00003323-RA | No alias | (at3g24120 : 251.0) Homeodomain-like superfamily... | 0.03 | Orthogroups_2024-Update | |
| PSME_00040944-RA | No alias | (at3g04030 : 275.0) Homeodomain-like superfamily... | 0.03 | Orthogroups_2024-Update | |
| PSME_00043566-RA | No alias | (at3g04030 : 229.0) Homeodomain-like superfamily... | 0.03 | Orthogroups_2024-Update | |
| PSME_00051778-RA | No alias | (at1g32240 : 127.0) Encodes a member of the KANADI... | 0.03 | Orthogroups_2024-Update | |
| Potri.002G130200 | No alias | Homeodomain-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.004G082400 | No alias | Homeodomain-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s141_97V6 | No alias | myb family transcription factor | 0.03 | Orthogroups_2024-Update | |
| Pp1s27_9V6 | No alias | MUJ8.2; myb family transcription factor [Arabidopsis thaliana] | 0.03 | Orthogroups_2024-Update | |
| Pp1s55_182V6 | No alias | T3G21.3; myb family transcription factor [Arabidopsis thaliana] | 0.03 | Orthogroups_2024-Update | |
| Seita.3G199300.1 | No alias | GARP subgroup PHL transcription factor | 0.03 | Orthogroups_2024-Update | |
| Sobic.009G178000.1 | No alias | GARP subgroup PHL transcription factor | 0.02 | Orthogroups_2024-Update | |
| Solyc11g022470 | No alias | Myb family transcription factor family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
| Sopen06g021670 | No alias | Myb-like DNA-binding domain | 0.03 | Orthogroups_2024-Update | |
| Sopen07g023530 | No alias | Myb-like DNA-binding domain | 0.02 | Orthogroups_2024-Update | |
| Sopen08g024980 | No alias | Myb-like DNA-binding domain | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003684 | damaged DNA binding | IEP | Predicted GO |
| MF | GO:0003883 | CTP synthase activity | IEP | Predicted GO |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
| MF | GO:0003924 | GTPase activity | IEP | Predicted GO |
| CC | GO:0005787 | signal peptidase complex | IEP | Predicted GO |
| CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Predicted GO |
| BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | Predicted GO |
| BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | Predicted GO |
| BP | GO:0006465 | signal peptide processing | IEP | Predicted GO |
| BP | GO:0016485 | protein processing | IEP | Predicted GO |
| MF | GO:0044183 | protein binding involved in protein folding | IEP | Predicted GO |
| CC | GO:0044432 | endoplasmic reticulum part | IEP | Predicted GO |
| BP | GO:0045048 | protein insertion into ER membrane | IEP | Predicted GO |
| BP | GO:0051205 | protein insertion into membrane | IEP | Predicted GO |
| BP | GO:0051604 | protein maturation | IEP | Predicted GO |
| BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0072657 | protein localization to membrane | IEP | Predicted GO |
| BP | GO:0090150 | establishment of protein localization to membrane | IEP | Predicted GO |
| CC | GO:1905368 | peptidase complex | IEP | Predicted GO |
| No external refs found! |