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  5. Brara.I01861.1

Brara.I01861.1


Description : CHD3-type chromatin remodeling factor *(PKL/PKR)


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I01861.1
Cluster HCAA Clusters: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
164481 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
440203 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
A4A49_03849 No alias protein chromatin remodeling 4 0.03 Orthogroups_2024-Update
Brara.C01994.1 No alias SMARCA component *(SYD/BRM/MINU) 0.03 Orthogroups_2024-Update
Glyma.01G175300 No alias chromatin remodeling 1 0.05 Orthogroups_2024-Update
Seita.4G050000.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.03 Orthogroups_2024-Update
evm.model.tig00000128.11 No alias (at5g18620 : 692.0) chromatin remodeling factor17... 0.01 Orthogroups_2024-Update
evm.model.tig00000350.9 No alias (at2g25170 : 212.0) Encodes a SWI/SWF nuclear-localized... 0.01 Orthogroups_2024-Update
evm.model.tig00020825.19 No alias (at2g13370 : 429.0) chromatin remodeling 5 (CHR5);... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004860 protein kinase inhibitor activity IEP Predicted GO
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019210 kinase inhibitor activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 115 158
IPR009463 DUF1087 1316 1354
IPR000330 SNF2_N 718 995
IPR023780 Chromo_domain 609 660
IPR001650 Helicase_C 1022 1132
No external refs found!