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  5. Brara.I05590.1

Brara.I05590.1


Description : component *(RPP1) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0002306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002306_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.I05590.1
Cluster HCAA Clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
133023 No alias 60S acidic ribosomal protein family 0.13 Orthogroups_2024-Update
At1g01100 No alias 60S acidic ribosomal protein P1-1... 0.04 Orthogroups_2024-Update
At5g47700 No alias 60S acidic ribosomal protein P1-3... 0.04 Orthogroups_2024-Update
Bradi3g13750 No alias 60S acidic ribosomal protein family 0.03 Orthogroups_2024-Update
Brara.C02860.1 No alias component *(RPP1) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Brara.I00080.1 No alias component *(RPP1) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Cre17.g738300 No alias 60S acidic ribosomal protein family 0.12 Orthogroups_2024-Update
Glyma.03G260900 No alias 60S acidic ribosomal protein family 0.1 Orthogroups_2024-Update
Glyma.04G229000 No alias 60S acidic ribosomal protein family 0.07 Orthogroups_2024-Update
Glyma.06G135800 No alias 60S acidic ribosomal protein family 0.07 Orthogroups_2024-Update
Glyma.19G259800 No alias 60S acidic ribosomal protein family 0.07 Orthogroups_2024-Update
HORVU7Hr1G075360.2 No alias component *(RPP1) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Kfl01021_0050 kfl01021_0050_v1.1 (p29763|rla1_chlre : 92.0) 60S acidic ribosomal protein... 0.01 Orthogroups_2024-Update
LOC_Os08g02340 No alias 60S acidic ribosomal protein, putative, expressed 0.02 Orthogroups_2024-Update
Mp6g11950.1 No alias component RPP1 of LSU proteome component 0.09 Orthogroups_2024-Update
PSME_00011424-RA No alias (at5g24510 : 97.1) 60S acidic ribosomal protein family;... 0.05 Orthogroups_2024-Update
Potri.012G021700 No alias 60S acidic ribosomal protein family 0.06 Orthogroups_2024-Update
Potri.014G105400 No alias 60S acidic ribosomal protein family 0.05 Orthogroups_2024-Update
Potri.015G004700 No alias 60S acidic ribosomal protein family 0.06 Orthogroups_2024-Update
Pp1s134_153V6 No alias 60s acidic ribosomal protein 0.05 Orthogroups_2024-Update
Pp1s152_152V6 No alias 60s acidic ribosomal protein 0.15 Orthogroups_2024-Update
Pp1s28_131V6 No alias 60s acidic ribosomal protein 0.16 Orthogroups_2024-Update
Pp1s49_284V6 No alias 60s acidic ribosomal protein 0.04 Orthogroups_2024-Update
Pp1s68_115V6 No alias 60s acidic ribosomal protein p1 0.12 Orthogroups_2024-Update
Sobic.007G018300.1 No alias component *(RPP1) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Solyc01g104370 No alias 60S acidic ribosomal protein P1 (AHRD V3.3 *** A0A199VEQ5_ANACO) 0.13 Orthogroups_2024-Update
Sopen01g002170 No alias 60s Acidic ribosomal protein 0.06 Orthogroups_2024-Update
Sopen01g046810 No alias 60s Acidic ribosomal protein 0.12 Orthogroups_2024-Update
evm.model.contig_2051.2 No alias no hits & (original description: no original description) 0.07 Orthogroups_2024-Update
evm.model.contig_4546.2 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
CC GO:0016272 prefoldin complex IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!