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  5. Brara.J00533.1

Brara.J00533.1


Description : TUB-type transcription factor


Gene families : OG_42_0000271 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000271_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.J00533.1
Cluster HCAA Clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
At1g47270 No alias Tubby-like F-box protein 6... 0.05 Orthogroups_2024-Update
Bradi1g62390 No alias tubby like protein 3 0.02 Orthogroups_2024-Update
Bradi2g46350 No alias tubby like protein 7 0.03 Orthogroups_2024-Update
Bradi5g27110 No alias tubby like protein 1 0.02 Orthogroups_2024-Update
GRMZM2G068586 No alias tubby like protein 7 0.03 Orthogroups_2024-Update
Glyma.13G269600 No alias tubby like protein 7 0.05 Orthogroups_2024-Update
LOC_Os03g22800 No alias OsFBT5 - F-box and tubby domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_103920g0010 No alias (at2g47900 : 266.0) Member of TLP family; tubby like... 0.03 Orthogroups_2024-Update
Potri.001G390200 No alias tubby like protein 7 0.03 Orthogroups_2024-Update
Potri.005G228500 No alias tubby like protein 6 0.03 Orthogroups_2024-Update
Pp1s222_14V6 No alias No description available 0.01 Orthogroups_2024-Update
Seita.3G148500.1 No alias TUB-type transcription factor 0.02 Orthogroups_2024-Update
Seita.5G393600.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Seita.9G404200.1 No alias TUB-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.001G372000.1 No alias TUB-type transcription factor 0.02 Orthogroups_2024-Update
Solyc04g071440 No alias Tubby-like F-box protein (AHRD V3.3 *** K4BTD6_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Predicted GO
MF GO:0004806 triglyceride lipase activity IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006000 fructose metabolic process IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 51 95
IPR000007 Tubby_C 112 397
No external refs found!