Brara.J01854.1

Description : Unknown function

Gene families : OG_42_0001305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001305_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.J01854.1
Cluster	HCAA Clusters: Cluster_264

Target	Alias	Description	ECC score	Gene Family Method
At5g16750	No alias	Transducin family protein / WD-40 repeat family protein...	0.06	Orthogroups_2024-Update
Cre07.g344050	No alias	Transducin family protein / WD-40 repeat family protein	0.04	Orthogroups_2024-Update
HORVU2Hr1G106110.11	No alias	SSU processome assembly factor *(TOZ)	0.04	Orthogroups_2024-Update
Kfl00871_0040	kfl00871_0040_v1.1	(at5g16750 : 795.0) Encodes a nucleolar localized WD-40...	0.06	Orthogroups_2024-Update
Mp8g08070.1	No alias	SSU processome assembly factor (TOZ)	0.02	Orthogroups_2024-Update
PSME_00015090-RA	No alias	(at5g16750 : 174.0) Encodes a nucleolar localized WD-40...	0.03	Orthogroups_2024-Update
Potri.013G079600	No alias	Transducin family protein / WD-40 repeat family protein	0.05	Orthogroups_2024-Update
Pp1s301_39V6	No alias	wd40-repeat protein	0.03	Orthogroups_2024-Update
Seita.7G219600.1	No alias	SSU processome assembly factor *(TOZ)	0.05	Orthogroups_2024-Update
Solyc03g097160	No alias	Transducin/WD40 repeat-like superfamily protein (AHRD...	0.05	Orthogroups_2024-Update
Sopen03g027900	No alias	WD domain, G-beta repeat	0.06	Orthogroups_2024-Update
evm.model.contig_3462.1	No alias	(at5g16750 : 203.0) Encodes a nucleolar localized WD-40...	0.03	Orthogroups_2024-Update
evm.model.tig00000704.61	No alias	(at5g16750 : 313.0) Encodes a nucleolar localized WD-40...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	16Dec
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	16Dec
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	16Dec
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Predicted GO
BP	GO:0001510	RNA methylation	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003690	double-stranded DNA binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
BP	GO:0006766	vitamin metabolic process	IEP	Predicted GO
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Predicted GO
BP	GO:0006771	riboflavin metabolic process	IEP	Predicted GO
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008649	rRNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEP	Predicted GO
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Predicted GO
BP	GO:0009110	vitamin biosynthetic process	IEP	Predicted GO
BP	GO:0009231	riboflavin biosynthetic process	IEP	Predicted GO
MF	GO:0016435	rRNA (guanine) methyltransferase activity	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
BP	GO:0031167	rRNA methylation	IEP	Predicted GO
BP	GO:0032259	methylation	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0034511	U3 snoRNA binding	IEP	Predicted GO
BP	GO:0036265	RNA (guanine-N7)-methylation	IEP	Predicted GO
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Predicted GO
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Predicted GO
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0043414	macromolecule methylation	IEP	Predicted GO
BP	GO:0070475	rRNA base methylation	IEP	Predicted GO
BP	GO:0070476	rRNA (guanine-N7)-methylation	IEP	Predicted GO
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	136	174
IPR001680	WD40_repeat	56	88
IPR001680	WD40_repeat	93	130
IPR013934	SSU_processome_Utp13	194	249

External Links

No external refs found!

Brara.J01854.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation