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  5. At2g40830

At2g40830


Description : Probable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At2g40830
Cluster HCCA clusters: Cluster_240

Target Alias Description ECC score Gene Family Method Actions
Bradi4g44277 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.I00804.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G021480 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G157855 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G048700 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G072900 No alias RING-H2 finger C1A 0.03 Orthogroups_2024-Update
HORVU0Hr1G019650.1 No alias Unknown function 0.02 Orthogroups_2024-Update
MA_10435153g0010 No alias (at3g19950 : 192.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_126084g0010 No alias (at3g56580 : 137.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
Potri.002G085800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Solyc05g007900 No alias LOW QUALITY:RING/U-box superfamily protein, putative... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR039525 RNF126-like_zinc-ribbon 6 37
IPR001841 Znf_RING 189 231
No external refs found!