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  5. HORVU2Hr1G109040.4

HORVU2Hr1G109040.4


Description : GARP subgroup PHL transcription factor


Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU2Hr1G109040.4
Cluster HCAA Clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
A4A49_16908 No alias putative transcription factor kan2 0.03 Orthogroups_2024-Update
Bradi1g07511 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.E02831.1 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
Brara.G00036.1 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G162409 No alias phosphate starvation response 1 0.04 Orthogroups_2024-Update
Glyma.19G146600 No alias myb-like HTH transcriptional regulator family protein 0.02 Orthogroups_2024-Update
Potri.001G314800 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.013G060200 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.016G001100 No alias myb-like HTH transcriptional regulator family protein 0.03 Orthogroups_2024-Update
Potri.017G054800 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Pp1s60_59V6 No alias myb-cc type transfactor 0.03 Orthogroups_2024-Update
Seita.3G029000.1 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G121600.1 No alias GARP subgroup PHL transcription factor & transcription... 0.03 Orthogroups_2024-Update
Solyc06g008200 No alias Myb-like transcription factor family protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc10g083340 No alias Myb family transcription factor APL (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0005542 folic acid binding IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
BP GO:0031145 anaphase-promoting complex-dependent catabolic process IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
MF GO:0072341 modified amino acid binding IEP Predicted GO
MF GO:0097602 cullin family protein binding IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
InterPro domains Description Start Stop
IPR025756 Myb_CC_LHEQLE 351 397
IPR001005 SANT/Myb 264 313
No external refs found!