HORVU2Hr1G126750.3

Description : component *(NRPB1) of RNA polymerase II complex

Gene families : OG_42_0001434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001434_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Hordeum vulgare: HORVU2Hr1G126750.3
Cluster	HCAA Clusters: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
HORVU5Hr1G114340.1	No alias	component *(NRPB1) of RNA polymerase II complex	0.03	Orthogroups_2024-Update
HORVU5Hr1G114400.2	No alias	component *(NRPB1) of RNA polymerase II complex	0.02	Orthogroups_2024-Update
MA_5690g0010	No alias	(at4g35800 : 2144.0) Encodes the unique largest subunit...	0.02	Orthogroups_2024-Update
PSME_00028507-RA	No alias	(at4g35800 : 2161.0) Encodes the unique largest subunit...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	16Dec
BP	GO:0006366	transcription by RNA polymerase II	IEA	16Dec
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006099	tricarboxylic acid cycle	IEP	Predicted GO
BP	GO:0006101	citrate metabolic process	IEP	Predicted GO
MF	GO:0008107	galactoside 2-alpha-L-fucosyltransferase activity	IEP	Predicted GO
MF	GO:0008417	fucosyltransferase activity	IEP	Predicted GO
BP	GO:0016999	antibiotic metabolic process	IEP	Predicted GO
MF	GO:0031127	alpha-(1,2)-fucosyltransferase activity	IEP	Predicted GO
BP	GO:0042546	cell wall biogenesis	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
MF	GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	IEP	Predicted GO
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Predicted GO
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Predicted GO
BP	GO:0072350	tricarboxylic acid metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000722	RNA_pol_asu	385	553
IPR007083	RNA_pol_Rpb1_4	745	851
IPR000684	RNA_pol_II_repeat_euk	1869	1879
IPR000684	RNA_pol_II_repeat_euk	1634	1647
IPR000684	RNA_pol_II_repeat_euk	1627	1640
IPR000684	RNA_pol_II_repeat_euk	1641	1654
IPR000684	RNA_pol_II_repeat_euk	1662	1675
IPR000684	RNA_pol_II_repeat_euk	1606	1619
IPR000684	RNA_pol_II_repeat_euk	1754	1766
IPR000684	RNA_pol_II_repeat_euk	1767	1780
IPR000684	RNA_pol_II_repeat_euk	1613	1626
IPR000684	RNA_pol_II_repeat_euk	1718	1731
IPR000684	RNA_pol_II_repeat_euk	1739	1752
IPR000684	RNA_pol_II_repeat_euk	1648	1661
IPR000684	RNA_pol_II_repeat_euk	1677	1689
IPR000684	RNA_pol_II_repeat_euk	1704	1717
IPR000684	RNA_pol_II_repeat_euk	1691	1703
IPR000684	RNA_pol_II_repeat_euk	1781	1794
IPR000684	RNA_pol_II_repeat_euk	1599	1612
IPR000684	RNA_pol_II_repeat_euk	1733	1745
IPR000684	RNA_pol_II_repeat_euk	1819	1832
IPR007075	RNA_pol_Rpb1_6	924	1108
IPR007066	RNA_pol_Rpb1_3	557	720
IPR007080	RNA_pol_Rpb1_1	47	383
IPR007081	RNA_pol_Rpb1_5	858	1450
IPR007073	RNA_pol_Rpb1_7	1193	1329

External Links

No external refs found!

HORVU2Hr1G126750.3

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation