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  5. HORVU2Hr1G127520.1

HORVU2Hr1G127520.1


Description : C-class RAB GTPase


Gene families : OG_42_0001362 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001362_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU2Hr1G127520.1
Cluster HCAA Clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
GRMZM5G809265 No alias RAB GTPase homolog C2A 0.02 Orthogroups_2024-Update
Solyc10g086310 No alias No description available 0.03 Orthogroups_2024-Update
evm.model.tig00021127.182 No alias (p36862|yptv3_volca : 218.0) GTP-binding protein yptV3 -... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA 16Dec
MF GO:0005525 GTP binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003725 double-stranded RNA binding IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
InterPro domains Description Start Stop
IPR001806 Small_GTPase 22 183
No external refs found!