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  5. HORVU3Hr1G026110.4

HORVU3Hr1G026110.4


Description : RNA editing factor *(DOT4)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU3Hr1G026110.4
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
105356 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
113974 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
182822 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
77426 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_07003 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
AC203841.3_FG002 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
At2g33760 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.02 Orthogroups_2024-Update
At4g14170 No alias Pentatricopeptide repeat-containing protein At4g14170... 0.02 Orthogroups_2024-Update
Bradi1g35640 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g06450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 Orthogroups_2024-Update
Bradi2g15700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g51740 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Brara.A00474.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.B03211.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.F00497.1 No alias RNA editing factor *(OTP82) 0.04 Orthogroups_2024-Update
Brara.F01619.1 No alias RNA editing factor *(ECD1) 0.03 Orthogroups_2024-Update
GRMZM2G022884 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G031588 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G076257 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G103078 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G129783 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G144071 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G161368 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G163396 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G168378 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G423538 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G189000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.05G240300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G159200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G086500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G005600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G239300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G150300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G313300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G028500 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G085900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU4Hr1G009150.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os03g32620 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g24680 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
Mp8g01790.1 No alias ssDNA-binding protein (OSB) 0.02 Orthogroups_2024-Update
PSME_00001719-RA No alias (at4g18750 : 701.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00015055-RA No alias (at1g11290 : 619.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00018501-RA No alias (at3g46790 : 252.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
PSME_00022686-RA No alias (at1g11290 : 619.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00033049-RA No alias (at1g11290 : 583.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00035450-RA No alias (at4g33990 : 517.0) embryo defective 2758 (EMB2758);... 0.03 Orthogroups_2024-Update
Potri.004G184800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.014G087100 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Potri.015G018700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.018G092400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s169_110V6 No alias T12J13.14; pentatricopeptide (PPR) repeat-containing... 0.03 Orthogroups_2024-Update
Seita.1G311600.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Seita.2G001800.1 No alias RNA editing factor *(ELI1) 0.06 Orthogroups_2024-Update
Seita.2G068700.1 No alias RNA editing factor *(CRR28) 0.04 Orthogroups_2024-Update
Seita.2G247200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G176900.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.6G213800.1 No alias RNA editing factor *(DOT4) 0.04 Orthogroups_2024-Update
Seita.7G131800.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.8G075300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G015400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G151300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G025800.1 No alias RNA editing factor *(CRR22) 0.03 Orthogroups_2024-Update
Sobic.001G513000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G007000.2 No alias RNA editing factor *(ELI1) 0.03 Orthogroups_2024-Update
Sobic.002G065200.1 No alias RNA editing factor *(CRR28) 0.03 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G246800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G238700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G250700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.010G011800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G153600.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc01g091610 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
Solyc02g069500 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc04g063270 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc05g006800 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc07g005850 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc11g008940 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen02g024180 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen04g008620 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004347 glucose-6-phosphate isomerase activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006094 gluconeogenesis IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009617 response to bacterium IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0019319 hexose biosynthetic process IEP Predicted GO
BP GO:0042742 defense response to bacterium IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0046364 monosaccharide biosynthetic process IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
BP GO:0071586 CAAX-box protein processing IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 516 608
IPR002885 Pentatricopeptide_repeat 375 399
IPR002885 Pentatricopeptide_repeat 4 27
IPR002885 Pentatricopeptide_repeat 102 132
IPR002885 Pentatricopeptide_repeat 175 195
IPR002885 Pentatricopeptide_repeat 200 245
IPR002885 Pentatricopeptide_repeat 300 348
No external refs found!