1. Home
  2. Species
  3. Hordeum vulgare
  4. Sequence
  5. HORVU3Hr1G032420.12

HORVU3Hr1G032420.12


Description : SSU processome assembly factor *(SOF1)


Gene families : OG_42_0006062 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006062_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU3Hr1G032420.12
Cluster HCAA Clusters: Cluster_297


Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0030915 Smc5-Smc6 complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0106068 SUMO ligase complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 112 145
IPR001680 WD40_repeat 151 187
No external refs found!