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  5. HORVU3Hr1G059810.2

HORVU3Hr1G059810.2


Description : component *(bL12c) of large plastid ribosomal-subunit proteome


Gene families : OG_42_0003941 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003941_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU3Hr1G059810.2
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
A4A49_11444 No alias 50s ribosomal protein l12, chloroplastic 0.05 Orthogroups_2024-Update
Bradi2g45730 No alias ribosomal protein L12-C 0.13 Orthogroups_2024-Update
Brara.B03314.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.09 Orthogroups_2024-Update
Brara.F03180.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.1 Orthogroups_2024-Update
Brara.F03181.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Cre13.g581650 No alias ribosomal protein L12-A 0.13 Orthogroups_2024-Update
GRMZM2G360021 No alias ribosomal protein L12-C 0.04 Orthogroups_2024-Update
Kfl00181_0250 kfl00181_0250_v1.1 (q9tl30|rk12_nepol : 115.0) Chloroplast 50S ribosomal... 0.06 Orthogroups_2024-Update
LOC_Os05g49320 No alias ribosomal protein L7/L12 C-terminal domain containing... 0.02 Orthogroups_2024-Update
Mp5g15720.1 No alias component psRPL12 of large ribosomal subunit proteome 0.02 Orthogroups_2024-Update
Potri.001G346100 No alias ribosomal protein L12-A 0.08 Orthogroups_2024-Update
Pp1s215_82V6 No alias ribosomal protein l12 0.08 Orthogroups_2024-Update
Pp1s242_95V6 No alias ribosomal protein l12 0.09 Orthogroups_2024-Update
Pp1s60_169V6 No alias ribosomal protein l12 0.07 Orthogroups_2024-Update
Pp1s6_183V6 No alias ribosomal protein l12 0.11 Orthogroups_2024-Update
Seita.3G141800.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.05 Orthogroups_2024-Update
Seita.5G253700.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.1 Orthogroups_2024-Update
Sobic.003G246400.1 No alias component *(bL12c) of large plastid ribosomal-subunit proteome 0.14 Orthogroups_2024-Update
Solyc02g086730 No alias 50S ribosomal protein L12, chloroplastic (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen02g031490 No alias Ribosomal protein L7/L12 C-terminal domain 0.04 Orthogroups_2024-Update
Sopen02g031500 No alias Ribosomal protein L7/L12 C-terminal domain 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004109 coproporphyrinogen oxidase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0071586 CAAX-box protein processing IEP Predicted GO
InterPro domains Description Start Stop
IPR008932 Ribosomal_L7/L12_oligo 88 133
IPR013823 Ribosomal_L7/L12_C 143 209
No external refs found!