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  5. HORVU3Hr1G063670.2

HORVU3Hr1G063670.2


Description : component *(RACK1) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0002129 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU3Hr1G063670.2
Cluster HCAA Clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
266532 No alias receptor for activated C kinase 1B 0.11 Orthogroups_2024-Update
At1g18080 No alias RACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3] 0.03 Orthogroups_2024-Update
At1g48630 No alias RACK1B_AT [Source:UniProtKB/TrEMBL;Acc:A0A178W908] 0.05 Orthogroups_2024-Update
At3g18130 No alias Receptor for activated C kinase 1C... 0.07 Orthogroups_2024-Update
Bradi2g17350 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Orthogroups_2024-Update
Bradi2g46840 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Orthogroups_2024-Update
Brara.A02955.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
Brara.E02380.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Brara.F01274.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Brara.H02438.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Brara.I04799.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
GRMZM2G040477 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.05G243800 No alias receptor for activated C kinase 1C 0.05 Orthogroups_2024-Update
Glyma.08G051600 No alias receptor for activated C kinase 1C 0.08 Orthogroups_2024-Update
LOC_Os01g49290 No alias WD repeat-containing protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g47890 No alias WD domain, G-beta repeat domain containing protein, expressed 0.02 Orthogroups_2024-Update
Mp3g15630.1 No alias associated component RACK1 of SSU proteome 0.03 Orthogroups_2024-Update
PSME_00054687-RA No alias (o24076|gblp_medsa : 541.0) Guanine nucleotide-binding... 0.03 Orthogroups_2024-Update
Potri.012G052700 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Orthogroups_2024-Update
Potri.015G041600 No alias Transducin/WD40 repeat-like superfamily protein 0.07 Orthogroups_2024-Update
Pp1s259_87V6 No alias receptor of activated protein kinase c component of 40s... 0.02 Orthogroups_2024-Update
Pp1s276_2V6 No alias receptor of activated protein kinase c component of 40s... 0.04 Orthogroups_2024-Update
Seita.3G155500.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Seita.5G275300.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Sobic.003G261100.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Sobic.009G223300.1 No alias component *(RACK1) of small ribosomal-subunit (SSU) proteome 0.2 Orthogroups_2024-Update
Solyc03g119040 No alias LeArcA2 protein containing 7 WD40 repeats 0.16 Orthogroups_2024-Update
Solyc06g069010 No alias LeArcA1 protein 0.06 Orthogroups_2024-Update
Solyc12g040510 No alias Transducin/WD40 repeat-like superfamily protein (AHRD... 0.05 Orthogroups_2024-Update
Sopen03g037930 No alias WD domain, G-beta repeat 0.12 Orthogroups_2024-Update
Sopen06g026300 No alias WD domain, G-beta repeat 0.12 Orthogroups_2024-Update
Sopen12g020110 No alias WD domain, G-beta repeat 0.08 Orthogroups_2024-Update
evm.model.contig_2334.1 No alias (p25387|gblp_chlre : 464.0) Guanine nucleotide-binding... 0.1 Orthogroups_2024-Update
evm.model.tig00000169.6 No alias (p25387|gblp_chlre : 478.0) Guanine nucleotide-binding... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004146 dihydrofolate reductase activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006353 DNA-templated transcription, termination IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006760 folic acid-containing compound metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006783 heme biosynthetic process IEP Predicted GO
BP GO:0006784 heme a biosynthetic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0010011 auxin binding IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Predicted GO
MF GO:0042562 hormone binding IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046160 heme a metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046653 tetrahydrofolate metabolic process IEP Predicted GO
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 248 275
IPR001680 WD40_repeat 107 143
IPR001680 WD40_repeat 201 235
IPR001680 WD40_repeat 13 47
IPR001680 WD40_repeat 300 323
IPR001680 WD40_repeat 160 193
IPR001680 WD40_repeat 65 101
No external refs found!