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  5. At3g06680

At3g06680


Description : 60S ribosomal protein L29 [Source:UniProtKB/TrEMBL;Acc:F4JC32]


Gene families : OG_42_0003521 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003521_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g06680
Cluster HCCA clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
A4A49_53313 No alias 60s ribosomal protein l29-2 0.08 Orthogroups_2024-Update
Brara.E03260.1 No alias component *(eL29) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Cre03.g207050 No alias Ribosomal L29e protein family 0.08 Orthogroups_2024-Update
HORVU1Hr1G059570.2 No alias component *(eL29) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
MA_10433318g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00015658-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Potri.002G196800 No alias Ribosomal L29e protein family 0.04 Orthogroups_2024-Update
Potri.008G107700 No alias Ribosomal L29e protein family 0.04 Orthogroups_2024-Update
Potri.010G142001 No alias Ribosomal L29e protein family 0.03 Orthogroups_2024-Update
Pp1s28_307V6 No alias 60s ribosomal protein l29 0.08 Orthogroups_2024-Update
Pp1s58_102V6 No alias 60s ribosomal protein l29 0.06 Orthogroups_2024-Update
Pp1s79_253V6 No alias 60s ribosomal protein l29 0.09 Orthogroups_2024-Update
Solyc05g053440 No alias 60S ribosomal protein L29, putative (AHRD V3.3 *** B9RZN1_RICCO) 0.11 Orthogroups_2024-Update
Sopen11g022530 No alias Ribosomal L29e protein family 0.04 Orthogroups_2024-Update
evm.model.tig00000269.24 No alias (at3g06680 : 86.3) Ribosomal L29e protein family;... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004017 adenylate kinase activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Predicted GO
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
BP GO:0030150 protein import into mitochondrial matrix IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
BP GO:0065002 intracellular protein transmembrane transport IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0070585 protein localization to mitochondrion IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071806 protein transmembrane transport IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predicted GO
CC GO:0098799 outer mitochondrial membrane protein complex IEP Predicted GO
BP GO:1990542 mitochondrial transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002673 Ribosomal_L29e 25 64
No external refs found!