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  5. At3g07010

At3g07010


Description : Probable pectate lyase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Z8]


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g07010
Cluster HCCA clusters: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
A4A49_12542 No alias pectate lyase 0.03 Orthogroups_2024-Update
A4A49_16129 No alias putative pectate lyase 18 0.04 Orthogroups_2024-Update
A4A49_26358 No alias putative pectate lyase p18 0.03 Orthogroups_2024-Update
A4A49_35525 No alias putative pectate lyase 16 0.02 Orthogroups_2024-Update
A4A49_40134 No alias putative pectate lyase p59 0.03 Orthogroups_2024-Update
At3g53190 No alias Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q56XU8] 0.03 Orthogroups_2024-Update
At5g15110 No alias Pectate lyase family protein [Source:TAIR;Acc:AT5G15110] 0.04 Orthogroups_2024-Update
Brara.C00647.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.F00890.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.F02217.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.04 Orthogroups_2024-Update
Brara.G01649.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.I00732.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Glyma.13G145900 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G011200 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G255900 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Glyma.20G112600 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
MA_91467g0010 No alias (at4g24780 : 570.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00000524-RA No alias (at4g24780 : 590.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00005709-RA No alias (at3g07010 : 494.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00017512-RA No alias (at4g24780 : 545.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00019558-RA No alias (at4g13710 : 625.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00019559-RA No alias (at4g13710 : 600.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00023843-RA No alias (at4g13710 : 610.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00032290-RA No alias (at4g24780 : 602.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00050072-RA No alias (at5g63180 : 525.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.001G339500 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.004G007300 No alias root hair specific 14 0.03 Orthogroups_2024-Update
Potri.008G032700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.011G008100 No alias root hair specific 14 0.03 Orthogroups_2024-Update
Solyc02g087670 No alias Pectate lyase (AHRD V3.3 *** K4BBS3_SOLLC) 0.02 Orthogroups_2024-Update
Sopen02g038070 No alias Pectate lyase 0.03 Orthogroups_2024-Update
Sopen03g012780 No alias Pectate lyase 0.03 Orthogroups_2024-Update
Sopen03g019850 No alias Pectate lyase 0.03 Orthogroups_2024-Update
Sopen05g033960 No alias Pectate lyase 0.03 Orthogroups_2024-Update
Sopen09g024960 No alias Pectate lyase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002682 regulation of immune system process IEP Predicted GO
BP GO:0002831 regulation of response to biotic stimulus IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0004109 coproporphyrinogen oxidase activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
BP GO:0010112 regulation of systemic acquired resistance IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
CC GO:0031226 intrinsic component of plasma membrane IEP Predicted GO
BP GO:0031347 regulation of defense response IEP Predicted GO
BP GO:0032101 regulation of response to external stimulus IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
BP GO:0043900 regulation of multi-organism process IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0045088 regulation of innate immune response IEP Predicted GO
CC GO:0046658 anchored component of plasma membrane IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0050776 regulation of immune response IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0080134 regulation of response to stress IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 150 333
No external refs found!