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  5. HORVU3Hr1G115020.1

HORVU3Hr1G115020.1


Description : Unknown function


Gene families : OG_42_0001049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU3Hr1G115020.1
Cluster HCAA Clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
At2g29190 No alias Pumilio homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW06] 0.04 Orthogroups_2024-Update
Bradi2g39240 No alias pumilio 1 0.02 Orthogroups_2024-Update
Glyma.11G136700 No alias pumilio 2 0.03 Orthogroups_2024-Update
Glyma.12G060400 No alias pumilio 2 0.03 Orthogroups_2024-Update
Glyma.15G035900 No alias pumilio 2 0.02 Orthogroups_2024-Update
LOC_Os01g74030 No alias pumilio-family RNA binding protein, putative, expressed 0.05 Orthogroups_2024-Update
PSME_00014760-RA No alias (at2g29200 : 721.0) Encodes a member of the Arabidopsis... 0.03 Orthogroups_2024-Update
Solyc04g011580 No alias Pumilio, putative (AHRD V3.3 *** B9SDY2_RICCO) 0.04 Orthogroups_2024-Update
Solyc06g005670 No alias Pumilio-like protein (AHRD V3.3 *** A0A0B0PMB1_GOSAR) 0.03 Orthogroups_2024-Update
Sopen04g005760 No alias Nucleic acid binding protein NABP 0.03 Orthogroups_2024-Update
Sopen06g001650 No alias Nucleic acid binding protein NABP 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006772 thiamine metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009228 thiamine biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042723 thiamine-containing compound metabolic process IEP Predicted GO
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 604 637
IPR001313 Pumilio_RNA-bd_rpt 532 566
IPR001313 Pumilio_RNA-bd_rpt 714 747
IPR001313 Pumilio_RNA-bd_rpt 795 822
IPR001313 Pumilio_RNA-bd_rpt 569 602
IPR001313 Pumilio_RNA-bd_rpt 676 711
IPR001313 Pumilio_RNA-bd_rpt 646 670
IPR001313 Pumilio_RNA-bd_rpt 749 782
IPR012940 NABP 206 362
IPR012940 NABP 309 526
No external refs found!