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  5. HORVU4Hr1G024430.8

HORVU4Hr1G024430.8


Description : nucleoporin of nuclear pore complex *(NUP98)


Gene families : OG_42_0001108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU4Hr1G024430.8
Cluster HCAA Clusters: Cluster_226

Target Alias Description ECC score Gene Family Method Actions
Cre02.g086887 No alias SUPPRESSOR OF AUXIN RESISTANCE 3 0.02 Orthogroups_2024-Update
MA_10434126g0020 No alias (at1g80680 : 731.0) Mutant has early-flowering... 0.05 Orthogroups_2024-Update
PSME_00023234-RA No alias (at1g10390 : 778.0) Nucleoporin autopeptidase; FUNCTIONS... 0.02 Orthogroups_2024-Update
Seita.8G000600.1 No alias nucleoporin of nuclear pore complex *(NUP98) 0.05 Orthogroups_2024-Update
Sopen04g002340 No alias Nucleoporin autopeptidase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA 16Dec
BP GO:0006913 nucleocytoplasmic transport IEA 16Dec
MF GO:0017056 structural constituent of nuclear pore IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
MF GO:0051011 microtubule minus-end binding IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007230 Peptidase_S59 802 948
No external refs found!