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  5. HORVU5Hr1G051530.5

HORVU5Hr1G051530.5


Description : nuclear-encoded organellar RNA polymerase *(NEP)


Gene families : OG_42_0001092 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001092_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU5Hr1G051530.5
Cluster HCAA Clusters: Cluster_297

Target Alias Description ECC score Gene Family Method Actions
At1g68990 No alias DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4I0I3] 0.03 Orthogroups_2024-Update
Bradi4g08880 No alias DNA/RNA polymerases superfamily protein 0.03 Orthogroups_2024-Update
Sobic.002G378100.1 No alias nuclear-encoded organellar RNA polymerase *(NEP) 0.03 Orthogroups_2024-Update
Solyc02g089340 No alias DNA-directed RNA polymerase (AHRD V3.3 *** K4BC86_SOLLC) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR029262 RPOL_N 221 539
No external refs found!