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  5. HORVU5Hr1G054000.1

HORVU5Hr1G054000.1


Description : component *(LHCq) of LHC-II complex


Gene families : OG_42_0000070 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000070_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU5Hr1G054000.1
Cluster HCAA Clusters: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
A4A49_03871 No alias chlorophyll a-b binding protein 36, chloroplastic 0.02 Orthogroups_2024-Update
A4A49_14365 No alias chlorophyll a-b binding protein 21, chloroplastic 0.02 Orthogroups_2024-Update
A4A49_24464 No alias chlorophyll a-b binding protein 36, chloroplastic 0.03 Orthogroups_2024-Update
A4A49_64136 No alias chlorophyll a-b binding protein 13, chloroplastic 0.03 Orthogroups_2024-Update
Bradi1g15290 No alias photosystem II light harvesting complex gene 2.3 0.04 Orthogroups_2024-Update
Bradi1g24760 No alias light-harvesting chlorophyll B-binding protein 3 0.04 Orthogroups_2024-Update
Bradi4g07380 No alias chlorophyll A/B binding protein 1 0.03 Orthogroups_2024-Update
Bradi4g37210 No alias photosystem II light harvesting complex gene B1B2 0.03 Orthogroups_2024-Update
Brara.B02273.1 No alias component *(LHCq) of LHC-II complex 0.02 Orthogroups_2024-Update
Brara.C01741.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Brara.C04035.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.06 Orthogroups_2024-Update
Brara.D02090.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Brara.E00980.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E00981.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.E00982.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.F03187.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.G01647.1 No alias component *(LHCa1) of LHC-I complex 0.04 Orthogroups_2024-Update
Brara.I03747.1 No alias component *(LHCa1) of LHC-I complex 0.04 Orthogroups_2024-Update
Brara.J00907.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.K00763.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G429955 No alias photosystem II light harvesting complex gene B1B2 0.02 Orthogroups_2024-Update
Glyma.05G128000 No alias chlorophyll A/B binding protein 1 0.03 Orthogroups_2024-Update
Glyma.07G047600 No alias photosystem I light harvesting complex gene 2 0.04 Orthogroups_2024-Update
Glyma.09G071400 No alias photosystem I light harvesting complex gene 6 0.04 Orthogroups_2024-Update
Glyma.16G145800 No alias photosystem I light harvesting complex gene 1 0.03 Orthogroups_2024-Update
Glyma.16G165800 No alias light-harvesting chlorophyll-protein complex II subunit B1 0.03 Orthogroups_2024-Update
Kfl00104_0350 kfl00104_0350_v1.1 (at4g10340 : 325.0) photosystem II encoding the... 0.03 Orthogroups_2024-Update
Kfl00564_0030 kfl00564_0030_v1.1 (p13869|cb12_pethy : 291.0) Chlorophyll a-b binding... 0.03 Orthogroups_2024-Update
LOC_Os01g41710 No alias chlorophyll A-B binding protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g52240 No alias chlorophyll A-B binding protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g21590 No alias chlorophyll A-B binding protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g33820 No alias chlorophyll A-B binding protein, putative, expressed 0.02 Orthogroups_2024-Update
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.02 Orthogroups_2024-Update
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g06730.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g06780.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Orthogroups_2024-Update
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.02 Orthogroups_2024-Update
Potri.003G171500 No alias photosystem I light harvesting complex gene 2 0.02 Orthogroups_2024-Update
Pp1s13_200V6 No alias chlorophyll a b binding 0.02 Orthogroups_2024-Update
Pp1s161_32V6 No alias lhca1.2 gene for putative chlorophyll a-b binding protein Lhca1.2 0.02 Orthogroups_2024-Update
Pp1s177_13V6 No alias chlorophyll a b binding 0.03 Orthogroups_2024-Update
Pp1s241_66V6 No alias chlorophyll a-b binding protein 0.02 Orthogroups_2024-Update
Pp1s330_37V6 No alias chlorophyll a-b binding protein 0.02 Orthogroups_2024-Update
Pp1s52_157V6 No alias light-harvesting complex ii protein lhcb2 0.02 Orthogroups_2024-Update
Pp1s76_196V6 No alias chlorophyll a b binding 0.02 Orthogroups_2024-Update
Seita.4G139900.1 No alias component *(LHCa1) of LHC-I complex 0.02 Orthogroups_2024-Update
Seita.8G080900.1 No alias component *(LHCb5) of LHC-II complex 0.03 Orthogroups_2024-Update
Sobic.001G177000.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Sobic.002G289100.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Sobic.003G209800.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Sobic.004G056900.1 No alias component *(LHCa1) of LHC-I complex 0.03 Orthogroups_2024-Update
Sobic.005G087000.1 No alias component *(LHCb5) of LHC-II complex 0.02 Orthogroups_2024-Update
Solyc03g005790 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc06g069730 No alias chlorophyll a-b binding protein Cab12 0.04 Orthogroups_2024-Update
Solyc07g047850 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.04 Orthogroups_2024-Update
Sopen02g020010 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen02g020030 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen02g020040 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen02g020050 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen02g020060 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen02g020070 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen02g020090 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen03g001770 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen03g001780 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen05g034460 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen05g034480 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen06g027030 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen08g021280 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen12g002100 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen12g006800 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
MF GO:0008252 nucleotidase activity IEP Predicted GO
MF GO:0008253 5'-nucleotidase activity IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Predicted GO
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009264 deoxyribonucleotide catabolic process IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
MF GO:0016849 phosphorus-oxygen lyase activity IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 107 282
No external refs found!