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  5. HORVU6Hr1G013720.4

HORVU6Hr1G013720.4


Description : rRNA biogenesis auxiliary factor *(APUM23)


Gene families : OG_42_0007710 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007710_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU6Hr1G013720.4
Cluster HCAA Clusters: Cluster_297

Target Alias Description ECC score Gene Family Method Actions
Bradi4g25530 No alias pumilio 23 0.03 Orthogroups_2024-Update
Brara.G03119.1 No alias rRNA biogenesis auxiliary factor *(APUM23) 0.03 Orthogroups_2024-Update
Cre16.g649600 No alias pumilio 23 0.02 Orthogroups_2024-Update
Potri.003G073000 No alias pumilio 23 0.02 Orthogroups_2024-Update
Pp1s293_80V6 No alias T10D10.21; pumilio/Puf RNA-binding domain-containing... 0.04 Orthogroups_2024-Update
Sobic.003G146600.1 No alias rRNA biogenesis auxiliary factor *(APUM23) 0.05 Orthogroups_2024-Update
evm.model.tig00021234.17 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000315 organellar large ribosomal subunit IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005762 mitochondrial large ribosomal subunit IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 137 152
IPR001313 Pumilio_RNA-bd_rpt 506 540
IPR001313 Pumilio_RNA-bd_rpt 469 488
IPR001313 Pumilio_RNA-bd_rpt 358 389
No external refs found!