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At3g19950


Description : RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g19950
Cluster HCCA clusters: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
At3g56580 No alias E3 ubiquitin-protein ligase RZF1... 0.03 Orthogroups_2024-Update
Brara.F00949.1 No alias E3 ubiquitin ligase *(SNIPER) 0.03 Orthogroups_2024-Update
Brara.G02768.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.H02157.1 No alias E3 ubiquitin ligase *(SNIPER) 0.04 Orthogroups_2024-Update
GRMZM2G164358 No alias RING-H2 finger C1A 0.03 Orthogroups_2024-Update
Glyma.20G149700 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os03g22830 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g06770 No alias RING finger protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g37230 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_110029g0010 No alias (at1g55530 : 173.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00056956-RA No alias (at2g40830 : 186.0) Encodes a putative RING-H2 finger... 0.02 Orthogroups_2024-Update
Sobic.002G176300.2 No alias Unknown function 0.02 Orthogroups_2024-Update
evm.model.contig_2287.2 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_3394.2 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003725 double-stranded RNA binding IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0046834 lipid phosphorylation IEP Predicted GO
BP GO:0046854 phosphatidylinositol phosphorylation IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 214 257
IPR039525 RNF126-like_zinc-ribbon 20 53
No external refs found!