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  5. HORVU6Hr1G077120.1

HORVU6Hr1G077120.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU6Hr1G077120.1
Cluster HCAA Clusters: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
172230 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
416356 No alias plant U-box 24 0.03 Orthogroups_2024-Update
426053 No alias plant U-box 24 0.02 Orthogroups_2024-Update
A4A49_10671 No alias u-box domain-containing protein 27 0.04 Orthogroups_2024-Update
A4A49_22370 No alias u-box domain-containing protein 26 0.03 Orthogroups_2024-Update
At2g35930 No alias E3 ubiquitin-protein ligase PUB23... 0.03 Orthogroups_2024-Update
At5g64660 No alias U-box domain-containing protein 27... 0.02 Orthogroups_2024-Update
Bradi5g09720 No alias plant U-box 22 0.03 Orthogroups_2024-Update
GRMZM2G151204 No alias CYS, MET, PRO, and GLY protein 1 0.05 Orthogroups_2024-Update
GRMZM2G168980 No alias plant U-box 23 0.03 Orthogroups_2024-Update
Glyma.08G147200 No alias CYS, MET, PRO, and GLY protein 2 0.03 Orthogroups_2024-Update
Glyma.10G081900 No alias plant U-box 23 0.03 Orthogroups_2024-Update
Glyma.14G212200 No alias CYS, MET, PRO, and GLY protein 1 0.02 Orthogroups_2024-Update
HORVU6Hr1G089590.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
LOC_Os02g33590 No alias U-box domain-containing protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g34030 No alias U-box domain-containing protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g35680 No alias U-box domain containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os07g37410 No alias expressed protein 0.02 Orthogroups_2024-Update
MA_10430196g0010 No alias (at2g35930 : 192.0) Encodes a cytoplasmically localized... 0.03 Orthogroups_2024-Update
MA_311559g0010 No alias (at3g52450 : 124.0) Encodes a cytoplasmically localized... 0.03 Orthogroups_2024-Update
MA_684442g0010 No alias (at3g52450 : 140.0) Encodes a cytoplasmically localized... 0.03 Orthogroups_2024-Update
PSME_00022617-RA No alias (at3g52450 : 247.0) Encodes a cytoplasmically localized... 0.02 Orthogroups_2024-Update
PSME_00026834-RA No alias (at3g19380 : 258.0) plant U-box 25 (PUB25); FUNCTIONS... 0.04 Orthogroups_2024-Update
PSME_00043995-RA No alias (at1g49780 : 227.0) plant U-box 26 (PUB26); FUNCTIONS... 0.04 Orthogroups_2024-Update
PSME_00048709-RA No alias (at2g35930 : 183.0) Encodes a cytoplasmically localized... 0.02 Orthogroups_2024-Update
PSME_00049378-RA No alias (at3g19380 : 185.0) plant U-box 25 (PUB25); FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00049469-RA No alias (at2g35930 : 281.0) Encodes a cytoplasmically localized... 0.03 Orthogroups_2024-Update
PSME_00054803-RA No alias (at3g52450 : 283.0) Encodes a cytoplasmically localized... 0.02 Orthogroups_2024-Update
PSME_00056516-RA No alias (at3g19380 : 420.0) plant U-box 25 (PUB25); FUNCTIONS... 0.08 Orthogroups_2024-Update
PSME_00056761-RA No alias (at3g19380 : 247.0) plant U-box 25 (PUB25); FUNCTIONS... 0.06 Orthogroups_2024-Update
Potri.002G070500 No alias plant U-box 29 0.04 Orthogroups_2024-Update
Potri.005G189800 No alias plant U-box 29 0.03 Orthogroups_2024-Update
Potri.006G202600 No alias plant U-box 22 0.03 Orthogroups_2024-Update
Potri.017G135000 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
Seita.7G104100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G474100.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.001G441100.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G169200.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G245100.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.010G102000.1 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA 16Dec
BP GO:0016567 protein ubiquitination IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
CC GO:0034357 photosynthetic membrane IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
CC GO:0042651 thylakoid membrane IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003613 Ubox_domain 105 176
No external refs found!