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  5. At3g24230

At3g24230


Description : Probable pectate lyase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM5]


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g24230
Cluster HCCA clusters: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
A4A49_12542 No alias pectate lyase 0.04 Orthogroups_2024-Update
At1g11920 No alias Putative pectate lyase 2 [Source:UniProtKB/Swiss-Prot;Acc:O65388] 0.04 Orthogroups_2024-Update
At3g24670 No alias Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A178VLR8] 0.03 Orthogroups_2024-Update
At4g22080 No alias Probable pectate lyase 16... 0.03 Orthogroups_2024-Update
At5g15110 No alias Pectate lyase family protein [Source:TAIR;Acc:AT5G15110] 0.03 Orthogroups_2024-Update
Brara.B00588.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.J02392.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.04 Orthogroups_2024-Update
Glyma.08G296900 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Glyma.17G126500 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.18G175300 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G255900 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G002880.2 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
LOC_Os06g05260 No alias pectate lyase precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_101171g0010 No alias (at1g67750 : 487.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
MA_10426822g0020 No alias (at1g67750 : 481.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
MA_97947g0010 No alias (at1g67750 : 510.0) Pectate lyase family protein;... 0.04 Orthogroups_2024-Update
Mp3g01000.1 No alias pectate lyase 0.02 Orthogroups_2024-Update
PSME_00009672-RA No alias (at5g48900 : 608.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00030878-RA No alias (at5g48900 : 447.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00041064-RA No alias (at1g67750 : 595.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
PSME_00043773-RA No alias (at1g67750 : 590.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
PSME_00044682-RA No alias (at1g67750 : 551.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
Potri.008G148800 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Potri.017G078400 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Solyc03g058890 No alias Pectate lyase (AHRD V3.3 *** K4BGT7_SOLLC) 0.04 Orthogroups_2024-Update
Sopen05g033960 No alias Pectate lyase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 188 369
No external refs found!