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  5. HORVU7Hr1G080560.5

HORVU7Hr1G080560.5


Description : SSU processome assembly factor *(UTP14)


Gene families : OG_42_0004122 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004122_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU7Hr1G080560.5
Cluster HCAA Clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
At5g08600 No alias U3 ribonucleoprotein (Utp) family protein... 0.03 Orthogroups_2024-Update
Bradi1g62850 No alias U3 ribonucleoprotein (Utp) family protein 0.07 Orthogroups_2024-Update
Brara.B02606.1 No alias SSU processome assembly factor *(UTP14) 0.04 Orthogroups_2024-Update
Cre11.g478950 No alias U3 ribonucleoprotein (Utp) family protein 0.04 Orthogroups_2024-Update
Kfl00684_0090 kfl00684_0090_v1.1 (at4g02400 : 189.0) U3 ribonucleoprotein (Utp) family... 0.03 Orthogroups_2024-Update
Pp1s78_50V6 No alias No description available 0.04 Orthogroups_2024-Update
Sobic.001G376900.1 No alias SSU processome assembly factor *(UTP14) 0.03 Orthogroups_2024-Update
evm.model.contig_2144.4 No alias (gnl|cdd|68872 : 97.4) no description available &... 0.05 Orthogroups_2024-Update
evm.model.tig00020554.20 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
evm.model.tig00020554.21 No alias (at4g02400 : 114.0) U3 ribonucleoprotein (Utp) family... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
MF GO:0070037 rRNA (pseudouridine) methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!