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  5. Sobic.001G161400.1

Sobic.001G161400.1


Description : ssDNA-binding protein *(OSB)


Gene families : OG_42_0002038 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002038_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G161400.1
Cluster HCAA Clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
At1g31010 No alias Protein OSB4, chloroplastic... 0.04 Orthogroups_2024-Update
At4g20010 No alias PTAC9 [Source:UniProtKB/TrEMBL;Acc:A0A178UX75] 0.02 Orthogroups_2024-Update
Bradi1g14220 No alias Primosome PriB/single-strand DNA-binding 0.06 Orthogroups_2024-Update
Brara.I02757.1 No alias cofactor of plastid-encoded RNA polymerase *(TAC9) &... 0.03 Orthogroups_2024-Update
Cre12.g483720 No alias plastid transcriptionally active 9 0.01 Orthogroups_2024-Update
LOC_Os03g43420 No alias single-stranded DNA-binding protein, putative, expressed 0.06 Orthogroups_2024-Update
Potri.001G394200 No alias plastid transcriptionally active 9 0.03 Orthogroups_2024-Update
Solyc09g065840 No alias single-stranded DNA binding protein-like protein 0.02 Orthogroups_2024-Update
Sopen09g002310 No alias Single-strand binding protein family 0.03 Orthogroups_2024-Update
Sopen09g027630 No alias Single-strand binding protein family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
CC GO:0005856 cytoskeleton IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006480 N-terminal protein amino acid methylation IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0031365 N-terminal protein amino acid modification IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000424 Primosome_PriB/ssb 75 168
No external refs found!