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  5. Sobic.001G207400.1

Sobic.001G207400.1


Description : regulatory component *(KTN80) of Katanin ATP-dependent microtubule severing complex


Gene families : OG_42_0001613 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001613_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G207400.1
Cluster HCAA Clusters: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
At5g08390 No alias Katanin p80 WD40 repeat-containing subunit B1 homolog... 0.03 Orthogroups_2024-Update
Pp1s101_210V6 No alias No description available 0.03 Orthogroups_2024-Update
Seita.3G015300.1 No alias regulatory component *(KTN80) of Katanin ATP-dependent... 0.04 Orthogroups_2024-Update
evm.model.tig00000691.10 No alias (at5g23430 : 174.0) Transducin/WD40 repeat-like... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
MF GO:0008017 microtubule binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
CC GO:0000808 origin recognition complex IEP Predicted GO
MF GO:0004565 beta-galactosidase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0008373 sialyltransferase activity IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
CC GO:0009341 beta-galactosidase complex IEP Predicted GO
MF GO:0015925 galactosidase activity IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1902554 serine/threonine protein kinase complex IEP Predicted GO
CC GO:1902911 protein kinase complex IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
CC GO:1990316 Atg1/ULK1 kinase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 134 171
IPR001680 WD40_repeat 175 213
IPR001680 WD40_repeat 91 129
IPR028021 Katanin_C-terminal 707 863
No external refs found!