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  5. Sobic.001G234300.1

Sobic.001G234300.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0000680 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000680_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G234300.1
Cluster HCAA Clusters: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
A4A49_22241 No alias hypothetical protein 0.06 Orthogroups_2024-Update
A4A49_26078 No alias hypothetical protein 0.02 Orthogroups_2024-Update
At1g24440 No alias F21J9.10 [Source:UniProtKB/TrEMBL;Acc:Q9FYL9] 0.02 Orthogroups_2024-Update
At3g47160 No alias RING/U-box superfamily protein... 0.03 Orthogroups_2024-Update
Bradi3g27700 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G148908 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os10g30850 No alias zinc finger, RING-type, putative, expressed 0.03 Orthogroups_2024-Update
Seita.9G238100.1 No alias E3 ubiquitin ligase 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005856 cytoskeleton IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 137 176
No external refs found!