Description : Unknown function
Gene families : OG_42_0008145 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008145_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Sorghum bicolor: Sobic.001G267500.1 | |
Cluster | HCAA Clusters: Cluster_13 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi3g21093 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | Orthogroups_2024-Update | |
Seita.7G302100.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
Seita.8G012900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000075 | cell cycle checkpoint | IEP | Predicted GO |
BP | GO:0000077 | DNA damage checkpoint | IEP | Predicted GO |
CC | GO:0000178 | exosome (RNase complex) | IEP | Predicted GO |
BP | GO:0001522 | pseudouridine synthesis | IEP | Predicted GO |
MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003852 | 2-isopropylmalate synthase activity | IEP | Predicted GO |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Predicted GO |
MF | GO:0004645 | phosphorylase activity | IEP | Predicted GO |
MF | GO:0004674 | protein serine/threonine kinase activity | IEP | Predicted GO |
MF | GO:0005488 | binding | IEP | Predicted GO |
CC | GO:0005759 | mitochondrial matrix | IEP | Predicted GO |
BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
BP | GO:0006551 | leucine metabolic process | IEP | Predicted GO |
BP | GO:0006772 | thiamine metabolic process | IEP | Predicted GO |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Predicted GO |
MF | GO:0008061 | chitin binding | IEP | Predicted GO |
MF | GO:0008184 | glycogen phosphorylase activity | IEP | Predicted GO |
MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
BP | GO:0008652 | cellular amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0009081 | branched-chain amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009082 | branched-chain amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0009098 | leucine biosynthetic process | IEP | Predicted GO |
BP | GO:0009228 | thiamine biosynthetic process | IEP | Predicted GO |
BP | GO:0009451 | RNA modification | IEP | Predicted GO |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Predicted GO |
MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0016866 | intramolecular transferase activity | IEP | Predicted GO |
CC | GO:0030896 | checkpoint clamp complex | IEP | Predicted GO |
MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
BP | GO:0031570 | DNA integrity checkpoint | IEP | Predicted GO |
CC | GO:0031974 | membrane-enclosed lumen | IEP | Predicted GO |
BP | GO:0033554 | cellular response to stress | IEP | Predicted GO |
MF | GO:0034061 | DNA polymerase activity | IEP | Predicted GO |
BP | GO:0042723 | thiamine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0042724 | thiamine-containing compound biosynthetic process | IEP | Predicted GO |
MF | GO:0043167 | ion binding | IEP | Predicted GO |
MF | GO:0043169 | cation binding | IEP | Predicted GO |
CC | GO:0043233 | organelle lumen | IEP | Predicted GO |
BP | GO:0044283 | small molecule biosynthetic process | IEP | Predicted GO |
CC | GO:0044454 | nuclear chromosome part | IEP | Predicted GO |
BP | GO:0045786 | negative regulation of cell cycle | IEP | Predicted GO |
MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
MF | GO:0046912 | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | IEP | Predicted GO |
MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
MF | GO:0051287 | NAD binding | IEP | Predicted GO |
BP | GO:0051716 | cellular response to stimulus | IEP | Predicted GO |
CC | GO:0070013 | intracellular organelle lumen | IEP | Predicted GO |
BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Predicted GO |
CC | GO:1905354 | exoribonuclease complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 525 | 557 |
IPR002885 | Pentatricopeptide_repeat | 252 | 301 |
IPR002885 | Pentatricopeptide_repeat | 323 | 366 |
IPR002885 | Pentatricopeptide_repeat | 566 | 612 |
IPR002885 | Pentatricopeptide_repeat | 633 | 682 |
IPR002885 | Pentatricopeptide_repeat | 425 | 473 |
IPR002885 | Pentatricopeptide_repeat | 189 | 231 |
No external refs found! |