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  5. Sobic.001G384300.1

Sobic.001G384300.1


Description : GARP subgroup PHL transcription factor & transcription factor *(PHR1)


Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G384300.1
Cluster HCAA Clusters: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
405399 No alias myb-like HTH transcriptional regulator family protein 0.02 Orthogroups_2024-Update
A4A49_37335 No alias protein phr1-like 3 0.03 Orthogroups_2024-Update
At1g32240 No alias Probable transcription factor KAN2... 0.02 Orthogroups_2024-Update
At1g79430 No alias Myb family transcription factor APL... 0.03 Orthogroups_2024-Update
Glyma.08G116700 No alias myb-like HTH transcriptional regulator family protein 0.03 Orthogroups_2024-Update
Glyma.08G305000 No alias Function unknown 0.02 Orthogroups_2024-Update
Potri.010G185666 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.012G042100 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G001100 No alias myb-like HTH transcriptional regulator family protein 0.04 Orthogroups_2024-Update
Potri.017G054800 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.017G137600 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Seita.6G120200.1 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G161700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G132000.1 No alias KANADI-type transcription factor 0.03 Orthogroups_2024-Update
Sopen05g034340 No alias MYB-CC type transfactor, LHEQLE motif 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006643 membrane lipid metabolic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0006664 glycolipid metabolic process IEP Predicted GO
BP GO:0009247 glycolipid biosynthetic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016556 mRNA modification IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043484 regulation of RNA splicing IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0046467 membrane lipid biosynthetic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0050684 regulation of mRNA processing IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0080009 mRNA methylation IEP Predicted GO
BP GO:0090407 organophosphate biosynthetic process IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
BP GO:1903311 regulation of mRNA metabolic process IEP Predicted GO
BP GO:1903509 liposaccharide metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR025756 Myb_CC_LHEQLE 308 354
IPR001005 SANT/Myb 227 278
No external refs found!