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  5. Sobic.001G544300.1

Sobic.001G544300.1


Description : tRNA guanine-methyltransferase *(TRM3)


Gene families : OG_42_0002741 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002741_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Sorghum bicolor: Sobic.001G544300.1
Cluster HCAA Clusters: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Bradi1g78610 No alias tRNA/rRNA methyltransferase (SpoU) family protein 0.14 Orthogroups_2024-Update
Brara.A00891.1 No alias tRNA guanine-methyltransferase *(TRM3) 0.05 Orthogroups_2024-Update
Cre15.g637350 No alias tRNA/rRNA methyltransferase (SpoU) family protein 0.03 Orthogroups_2024-Update
Glyma.17G148200 No alias tRNA/rRNA methyltransferase (SpoU) family protein 0.07 Orthogroups_2024-Update
HORVU4Hr1G090170.17 No alias tRNA guanine-methyltransferase *(TRM3) 0.03 Orthogroups_2024-Update
Seita.9G579800.1 No alias tRNA guanine-methyltransferase *(TRM3) 0.15 Orthogroups_2024-Update
Solyc08g077850 No alias tRNA/rRNA methyltransferase family protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Sopen08g026360 No alias SpoU rRNA Methylase family 0.08 Orthogroups_2024-Update
evm.model.tig00020812.10 No alias (at4g17610 : 182.0) tRNA/rRNA methyltransferase (SpoU)... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
BP GO:0006396 RNA processing IEA 16Dec
MF GO:0008173 RNA methyltransferase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003852 2-isopropylmalate synthase activity IEP Predicted GO
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006551 leucine metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009098 leucine biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001537 SpoU_MeTrfase 1647 1788
No external refs found!