1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.002G043100.3

Sobic.002G043100.3


Description : class-II histone deacetylase


Gene families : OG_42_0002158 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002158_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G043100.3
Cluster HCAA Clusters: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
Pp1s34_252V6 No alias class II RPD3 type histone deacetylase protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 227 515
No external refs found!