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  5. Sobic.002G271600.1

Sobic.002G271600.1


Description : A-class RAB GTPase


Gene families : OG_42_0000131 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000131_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.002G271600.1
Cluster HCAA Clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
146310 No alias RAB GTPase homolog A1F 0.02 Orthogroups_2024-Update
At1g01200 No alias RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7] 0.02 Orthogroups_2024-Update
At5g59150 No alias Ras-related protein RABA2d... 0.02 Orthogroups_2024-Update
At5g60860 No alias Ras-related protein RABA1f... 0.03 Orthogroups_2024-Update
GRMZM2G052509 No alias RAB GTPase homolog A3 0.03 Orthogroups_2024-Update
HORVU1Hr1G001920.3 No alias A-class RAB GTPase 0.02 Orthogroups_2024-Update
HORVU1Hr1G033390.3 No alias A-class RAB GTPase 0.02 Orthogroups_2024-Update
HORVU5Hr1G056470.1 No alias A-class RAB GTPase 0.03 Orthogroups_2024-Update
HORVU5Hr1G114250.1 No alias A-class RAB GTPase 0.02 Orthogroups_2024-Update
HORVU5Hr1G120210.4 No alias A-class RAB GTPase 0.03 Orthogroups_2024-Update
LOC_Os01g47730 No alias ras-related protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g20050 No alias ras-related protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g35814 No alias ras-related protein, putative, expressed 0.02 Orthogroups_2024-Update
Potri.002G175700 No alias RAB GTPase homolog A3 0.03 Orthogroups_2024-Update
Potri.016G000400 No alias RAB GTPase homolog A2B 0.02 Orthogroups_2024-Update
Seita.2G282900.1 No alias A-class RAB GTPase 0.06 Orthogroups_2024-Update
Solyc01g086850 No alias Ras-related protein RGP1 (AHRD V3.3 *** RLGP1_ORYSJ) 0.02 Orthogroups_2024-Update
Solyc05g052900 No alias Ras-related protein, expressed (AHRD V3.3 *** D8L9F8_WHEAT) 0.02 Orthogroups_2024-Update
Sopen03g002280 No alias Ras family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA 16Dec
MF GO:0005525 GTP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0044183 protein binding involved in protein folding IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0110102 chloroplast ribulose bisphosphate carboxylase complex assembly IEP Predicted GO
InterPro domains Description Start Stop
IPR001806 Small_GTPase 35 196
No external refs found!